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Schema
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Assay category
1653
DNA binding
1439
Transcription
660
DNA accessibility
44
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
74
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3533
AMP
210
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
RFA
3349
AMP
210
T1D
184
AMP2
172
HPAP
47
KPMP
19
LungMap2
4
community
1
ITG
Experiment status
3986
released
Genome assembly (visualization)
2555
hg19
2493
GRCh38
5
hg18
Organism
3978
Homo sapiens
Target of assay
866
histone modification
865
histone
495
transcription factor
441
narrow histone mark
423
broad histone mark
290
control
105
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
other context
5
other post-translational modification
Biosample type
2273
tissue
742
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
pancreas
791
liver
684
connective tissue
491
adipose tissue
477
epithelium
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
97
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2218
adult
798
unknown
476
child
451
embryonic
46
newborn
Available data
2703
bam
2546
bigWig
1603
bed narrowPeak
1184
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
245
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
tbi
1
vcf
Platform
343
Illumina HiSeq 2000
137
Illumina HiSeq 2500
122
Illumina NovaSeq 6000
113
Illumina Genome Analyzer IIx
97
Illumina HiSeq 4000
92
Illumina Genome Analyzer
19
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
11
HiSeq HighOutput V4
10
Illumina NextSeq 500
8
HiSeq 1500
7
MiSeq
3
Illumina HiSeq X Ten
2
Applied Biosystems SOLiD System 3 Plus
1
Illumina Genome Analyzer I
Run type
669
single-ended
294
paired-ended
61
unknown
Read length (nt)
212
36
174
76
153
100
151
50
61
8
56
101
51
40
43
51
33
90
23
98
20
16
20
28
20
75
17
49
15
26
14
27
11
25
10
91
9
35
8
43
7
24
7
33
6
200
5
32
4
94
3
67
3
151
2
37
2
38
2
70
2
74
2
97
2
150
1
30
1
69
1
99
1
105
1
110
1
147
Mapped read length (nt)
5
50
4
36
Library insert size (nt)
15
225-275
12
>100
2
>200
1
150-250
1
>150
Library made from
2520
DNA
1458
RNA
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
July, 2025
1
October, 2022
1
September, 2018
Lab
3187
AMP-T2D consortium
292
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Replication type
2708
unreplicated
759
isogenic
519
anisogenic
Audit category:
272
inconsistent ontology term
38
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
35
missing controlled_by
Audit category:
47
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
organ_slims!
pancreas
type!
Annotation
Showing 4 of 3986 results
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Experiment
DSR934CIK
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (39 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR345JBQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (66 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR694WFN
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (42 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR817LLE
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP