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Embeddings type
30
Gene expression
7
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
37
umap
Underlying Assay
26
10X scRNA-seq
22
Smart-seq
4
10X snATAC-seq
2
10X snRNA-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
32
h5ad
5
mtx
4
rds
3
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
37
released
Genome assembly (visualization)
1
hg19
Organism
34
Homo sapiens
Biosample type
31
tissue
6
primary cell
Biosample term
4
islet of Langerhans
3
heart
3
pancreas
2
kidney
2
skeletal muscle
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lung
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
1
skin of body
1
spleen
1
stromal cell
1
thymus
1
tissues
1
trachea
Tissue term
6
pancreas
3
heart
3
skeletal muscle tissue
2
blood
2
kidney
1
bladder organ
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
large intestine
1
leukocyte
1
liver
1
lung
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
skin of body
1
spleen
1
stromal cell
1
thymus
1
tissues
1
trachea
Organ
6
pancreas
4
musculature of body
2
blood
2
bodily fluid
2
bone element
2
connective tissue
2
epithelium
2
heart
2
kidney
1
adipose tissue
1
bone marrow
1
eye
1
intestine
1
large intestine
1
liver
1
lung
1
lymph node
1
mammary gland
1
mouth
prostate gland
1
skin of body
1
spleen
1
thymus
1
trachea
Life stage
26
adult
Date released
25
May, 2022
2
July, 2025
2
October, 2024
1
August, 2021
1
June, 2025
1
March, 2023
1
March, 2024
1
November, 2021
1
September, 2020
1
September, 2021
1
September, 2023
Software used
1
cellranger-atac
1
r
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
27
AMP-T2D consortium
4
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
32
AMP
2
community
1
ENCODE
1
LungMap
1
T1D
RFA
29
AMP
3
AMP2
2
community
1
ENCODE3
1
LungMap2
1
T1D
organ_slims!
prostate gland
tissue_term_name!!
blood
Showing 2 of 37 results
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FileSet
DSR451YDC
released
Embeddings file set
: The human cell atlas of Muscle from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271MPP
released
Embeddings file set
: The human cell atlas of Heart from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP