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Clear Filters
Annotation type
  • 3target gene predictions
  • 2candidate regulatory elements
  • 2chromatin state
Annotation Category
  • 4cis-regulatory elements
  • 3Target gene links
Annotation type Category
  • 5ChIP-seq
  • 3DNase-seq
  • 1pCHi-C
  • 1snATAC-seq
Available data
  • 5bed bed3+
  • 1bed bed9
  • 1bed bed9+
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
  • 1GRCh38
Organism
  • 7Homo sapiens
Biosample type
  • 7primary cell
Biosample term
  • 4stromal cell of bone marrow
  • 2megakaryocyte
  • 1CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
Organ
  • 2856vasculature
  • 2805blood vessel
  • 2795bodily fluid
  • 2786blood
  • 2654vein
  • 688epithelium
  • 594kidney
  • 369brain
  • 350connective tissue
  • 340musculature of body
  • 290lung
  • 255intestine
  • 220heart
  • 220limb
  • 204pancreas
  • 180embryo
  • 164skin of body
  • 154large intestine
  • 130extraembryonic component
  • 114liver
  • 110stomach
  • 89adipose tissue
  • 81small intestine
  • 75uterus
  • 66adrenal gland
  • 66mammary gland
  • 64placenta
  • 61bone element
  • 60ureter
  • 58artery
  • 58prostate gland
  • 51penis
  • 45thymus
  • 42eye
  • 42gonad
  • 41esophagus
  • 40lymph node
  • 40spinal cord
  • 31spleen
  • 22nerve
  • 21lymphoid tissue
  • 21ovary
  • 21testis
  • 21thyroid gland
  • 18lymphatic vessel
  • 18mouth
  • 12breast
  • 12pituitary gland
  • 11bronchus
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 7bone marrow
  • 3nose
  • 1pericardium
Life stage
  • 4unknown
  • 1child
Date released
  • 3September, 2022
  • 1February, 2021
  • 1January, 2021
  • 1May, 2020
  • 1May, 2022
Software used
  • macs
  • 2chromhmm
  • 2r
  • 1chicago
  • 1cicero
  • 1encode-ccres
Lab
  • 6AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Project
  • 6AMP
  • 1T1D
Collection Tags
  • 3EpiMap
  • 2BLUEPRINT
  • 2T1D
  • 1ENCODE
RFA
  • 6AMP
  • 1T1D
software_used.software.name!
  • macs

Showing 7 of 7 results

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  • FileSet

    DSR748MDW

    released

    Annotation file set: Candidate regulatory elements for BSS01661 stromal cell of bone marrow from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR928GVV

    released

    Annotation file set: Target gene predictions for BSS01661 stromal cell of bone marrow from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR315JBI

    released

    Annotation file set: Chromatin states for BSS01661 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR180LXT

    released

    Annotation file set: Chromatin state of CD34-negative, CD41-positive, CD42-positive megakaryocyte cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR880WUR

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE stromal cell of bone marrow
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR345BXM

    released

    Annotation file set: coaccessible target genes annotation from snATAC-seq of megakaryocyte
    Lab: Kyle Gaulton, UCSD
    Project: T1D
  • FileSet

    DSR992TVD

    released

    Annotation file set: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
    Lab: AMP-T2D consortium
    Project: AMP
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