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Schema
Clear Filters
Annotation type
196
target gene predictions
114
accessible chromatin
66
candidate regulatory elements
51
chromatin state
28
histone modifications
27
Fine-mapped variants
16
eQTL
15
gene expression
9
binding sites
9
differential activity
7
variant allelic effects
Annotation Category
268
cis-regulatory elements
196
Target gene links
50
Genetic variant effects
24
Gene expression levels
Annotation type Category
284
DNase-seq
190
ChIP-seq
58
RNA-seq
6
ATAC-seq
5
H3K27ac ChIP-Seq
1
Capture-C
Available data
431
bed bed3+
49
tsv
46
bed bed9
10
bigWig
6
bigBed bed9
File set status
538
released
Genome assembly (visualization)
345
GRCh38
256
hg19
Organism
538
Homo sapiens
Biosample type
358
tissue
125
primary cell
48
cell line
7
in vitro differentiated cells
Biosample term
57
brain
53
head of caudate nucleus
36
dorsolateral prefrontal cortex
31
posterior cingulate gyrus
14
cerebellum
13
GABAergic neuron
12
frontal cortex
12
substantia nigra
10
caudate nucleus
10
layer of hippocampus
9
cingulate gyrus
8
temporal lobe
7
SK-N-DZ
7
SK-N-MC
7
SK-N-SH
7
astrocyte
7
glutamatergic neuron
6
Ammon's horn
6
cerebellar cortex
6
hypothalamus
6
midbrain
6
vip GABAergic cortical interneuron
5
Brodmann (1909) area 46
5
Daoy
5
angular gyrus
5
astrocyte of the cerebellum
5
middle frontal gyrus
5
putamen
5
sncg GABAergic interneuron
4
BE(2)-C
4
L2/3 intratelencephalic projecting glutamatergic neuron
4
L2/3-6 intratelencephalic projecting glutamatergic cortical neuron
4
L5 intratelencephalic projecting glutamatergic neuron
4
amygdala
4
anterior cingulate cortex
4
brain microvascular endothelial cell
4
cerebellum (Hemisphere)
4
choroid plexus epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell
4
globus pallidus
4
inferior parietal cortex
4
medium spiny neuron
4
medulla oblongata
4
oligodendrocyte
4
pituitary stalk
4
pons
4
sst GABAergic interneuron
3
A172
3
L4/5 intratelencephalic projecting glutamatergic neuron
3
L6 intratelencephalic projecting glutamatergic neuron
3
brain pericyte
3
near-projecting glutamatergic cortical neuron
3
neuron
3
nucleus accumbens
3
pvalb GABAergic interneuron
3
smooth muscle cell
2
cardiac fibroblast
2
H54
2
L6b glutamatergic cortical neuron
2
M059J
2
astrocyte of the hippocampus
2
hippocampal neuron
2
medial ganglionic eminence derived interneuron
2
medulloblastoma
2
oligodendrocyte precursor cell
2
pituitary gland
2
prefrontal cortex
1
BE2C
1
Bergmann glial cell
1
Brodmann (1909) area 9
1
CGE interneuron
1
D1/D2-hybrid medium spiny neuron
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
Glioblastoma
1
H4
1
L4 intratelencephalic projecting glutamatergic neuron
1
L6 corticothalamic-projecting glutamatergic cortical neuron
1
Lamp5 Lhx6 neuron
1
Microglia
1
Purkinje cell
1
U-87 MG
1
anterior parahippocampal gyrus
1
bed nucleus of stria terminalis
1
bipolar neuron
1
cardiac fibroblast
1
cell
1
cerebellar hemisphere
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
ecto neural progenitor cell
1
entorhinal cortex
1
ependymal cell
1
extratelencephalic-projecting glutamatergic cortical neuron
1
frontal pole
1
leukocyte
1
locus ceruleus
1
macrophage
1
mid-frontal lobe
1
middle frontal area 46
1
myelencephalon
1
neural progenitor cell
1
nucleus of ventral thalamus
1
occipital lobe
1
paraventricular nucleus of hypothalamus
1
pontine tegmentum
1
precentral gyrus
1
pvalb chandelier GABAergic interneuron
1
radial glial cell
1
raphe nuclei
1
sst chodl GABAergic interneuron
1
superior parietal cortex
1
superior temporal gyrus
1
temporal pole
1
vascular associated smooth muscle cell
Organ
1975
blood
1717
vasculature
1691
blood vessel
1663
bodily fluid
1564
vein
591
epithelium
538
brain
435
kidney
324
connective tissue
283
heart
262
lung
231
musculature of body
224
intestine
184
pancreas
172
skin of body
146
large intestine
143
liver
141
limb
134
embryo
103
extraembryonic component
96
eye
91
adipose tissue
75
stomach
74
muscle organ
70
mammary gland
64
adrenal gland
60
bone element
58
placenta
57
uterus
56
small intestine
56
thymus
53
artery
50
prostate gland
43
__MARKER__
43
gonad
40
spleen
38
ureter
37
lymph node
37
penis
32
thyroid gland
30
esophagus
30
spinal cord
21
ovary
21
testis
17
nerve
15
lymphoid tissue
12
bronchus
12
lymphatic vessel
12
skeleton
10
mouth
9
bone marrow
9
breast
6
pituitary gland
6
urinary bladder
5
tongue
5
vagina
3
nose
3
trachea
Life stage
129
adult
39
embryonic
21
fetal
17
child
12
unknown
4
young adult
Date released
246
July, 2026
112
September, 2022
65
February, 2021
27
March, 2020
17
January, 2020
12
February, 2020
12
June, 2020
10
January, 2022
9
May, 2026
8
May, 2020
5
August, 2017
5
May, 2021
4
May, 2019
3
October, 2022
1
February, 2024
1
November, 2019
1
September, 2023
Software used
87
r
55
macs
54
chromhmm
30
encode-ccres
10
gtex_finemapping_eQTL:caviar
9
gtex_finemapping_eQTL:caveman
9
qTLtools
8
gtex_finemapping_eQTL:dapg
7
deltasvm
7
gtex_eqtl:V8
5
abc
1
chicago
Lab
518
AMP-T2D consortium
9
Kyle Gaulton, UCSD
5
Jesse Engreitz, Stanford University
5
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Project
538
AMP
Collection Tags
149
ENCODE-rE2G
112
EpiMap
83
CATlas
46
ChIP-Atlas
44
GTEx
37
ENCODE
14
HDMA
13
DGA
9
T1D
9
T2D
9
eQTLCatalogue
9
pyxis
3
AMP
RFA
537
AMP
1
AMP2
type!!!
Award
Showing 5 of 538 results
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Download
FileSet
DSR770042
released
Annotation file set
: Accessible chromatin sites for Brain excitatory neurons (NEUROD2 excitatory neurons; UNC5D+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR223358
released
Annotation file set
: Accessible chromatin sites for Brain macrophages (PTPRC LY86 MRC1 CD163L1+; subset with high estimated contamination)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR498983
released
Annotation file set
: Accessible chromatin sites for Brain dorsal radial glia (VIM+ TOP2A+ (cycling) MOXD1+; EMX1/2+ indicating likely dorsal)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795632
released
Annotation file set
: Accessible chromatin sites for Brain excitatory neurons (TBR1/EMX1+ CUX2+ excitatory neurons)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR417779
released
Annotation file set
: Accessible chromatin sites for VIP+ GABAergic neurons - type 1 in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP