Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
breast epithelium
1
breast
Organ
561
epithelium
369
kidney
313
connective tissue
287
musculature of body
259
brain
226
lung
211
embryo
183
heart
182
pancreas
175
intestine
173
limb
146
extraembryonic component
145
skin of body
141
bodily fluid
140
vasculature
139
blood
98
large intestine
97
blood vessel
77
liver
77
stomach
73
placenta
66
eye
64
penis
64
ureter
64
uterus
60
small intestine
57
bone element
49
thymus
48
adrenal gland
48
lymph node
40
prostate gland
39
artery
39
mammary gland
38
spinal cord
28
gonad
22
vein
21
adipose tissue
18
skeleton
17
testis
16
bronchus
16
esophagus
16
lymphatic vessel
14
mouth
14
spleen
13
bone marrow
12
pituitary gland
10
lymphoid tissue
10
ovary
9
tongue
6
thyroid gland
5
trachea
5
urinary bladder
4
nerve
3
breast
1
nose
1
pericardium
vagina
Life stage
adult
Date released
1
January, 2022
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
1
qTLtools
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
organ_slims!
vagina
relevant_life_stage!
adult
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR266AND
released
Annotation file set
: breast eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097EPN
released
Annotation file set
: enhancer-gene predicton of breast_epithelium-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR042SCF
released
Annotation file set
: Accessible chromatin annotation for Breast Breast epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP