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Annotation type
4
target gene predictions
Annotation Category
4
Target gene links
Annotation type Category
2
Capture-C
1
HiC
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
adult endothelial progenitor cell
1
white adipose cell
Organ
4
connective tissue
3
brain
1
adipose tissue
1
bone element
1
bone marrow
1
liver
1
pancreas
1
thymus
Date released
2
September, 2023
1
March, 2020
1
May, 2020
Software used
135
r
130
macs
59
chromhmm
40
encode-ccres
31
abc
17
qTLtools
16
deltasvm
12
deseq2
5
fastqtl
4
chicago
4
peer
2
deeptools
2
gtex_eqtl:V8
2
gtex_finemapping_eQTL:caveman
2
gtex_finemapping_eQTL:caviar
2
gtex_finemapping_eQTL:dapg
2
mach2qtl
2
nospecificsoft_customcode
2
rasqual
2
samtools
2
umitools
1
cicero
1
eigenmt
1
emmax
1
epacts
1
fast-lmm
1
matrix-eQTL
1
probabel
1
seurat
1
unknown
Lab
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Project
4
AMP
Collection Tags
2
AMP
1
T2DKP
1
BLUEPRINT
1
DGA
1
T1D
RFA
2
AMP
2
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR841JDM
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Osteoblasts (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR722BWL
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Adipocytes (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR284RGT
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of adult endothelial progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355DOK
released
Annotation file set
: A target gene prediction annotation in white adipose cell of TSTSR423QSN pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP