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Clear Filters
Annotation type
  • 3eQTL
  • 2pQTL
Annotation Category
  • 5Genetic variant effects
Annotation type Category
  • 3RNA-seq
  • 2quantitative proteomics
Available data
  • 2bed bed3+
File set status
  • 5released
Genome assembly (visualization)
  • 5hg19
Organism
  • 5Homo sapiens
Biosample type
  • 5tissue
Biosample term
  • 4cartilage tissue
  • 1subcutaneous adipose tissue
Organ
  • 5connective tissue
  • 2pancreas
  • 1adipose tissue
Life stage
  • 5adult
Date released
  • 4August, 2021
  • 1February, 2021
Software used
  • 135r
  • 130macs
  • 59chromhmm
  • 40encode-ccres
  • 31abc
  • 17qTLtools
  • 16deltasvm
  • 12deseq2
  • 5fastqtl
  • 4chicago
  • 4peer
  • 2deeptools
  • 2gtex_eqtl:V8
  • 2gtex_finemapping_eQTL:caveman
  • 2gtex_finemapping_eQTL:caviar
  • 2gtex_finemapping_eQTL:dapg
  • 2mach2qtl
  • 2nospecificsoft_customcode
  • 2rasqual
  • 2samtools
  • 2umitools
  • 1cicero
  • 1eigenmt
  • 1emmax
  • 1epacts
  • 1fast-lmm
  • 1matrix-eQTL
  • 1probabel
  • 1seurat
  • 1unknown
Lab
  • 4ITG
  • 1Karen Mohlke, UNC
Project
  • 4ITG
  • 1AMP
Collection Tags
  • 4AMP
  • 4T2DKP
  • 1 T2DKP
  • 1DGA
RFA
  • 4ITG
  • 1AMP

Showing 5 of 5 results

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  • FileSet

    DSR524ZAH

    released

    Annotation file set: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
    Lab: ITG
    Project: ITG
  • FileSet

    DSR651XSZ

    released

    Annotation file set: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
    Lab: ITG
    Project: ITG
  • FileSet

    DSR376WYD

    released

    Annotation file set: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
    Lab: ITG
    Project: ITG
  • FileSet

    DSR276XRX

    released

    Annotation file set: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
    Lab: ITG
    Project: ITG
  • FileSet

    DSR965YTD

    released

    Annotation file set: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
    Lab: Karen Mohlke, UNC
    Project: AMP
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