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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
3
NT2-D1 cell
1
NT2/D1
Disease term
3
testicular embryonal carcinoma
Organ
110
epithelium
67
connective tissue
42
vasculature
27
lung
24
skin of body
20
blood vessel
19
brain
19
kidney
18
lymph node
16
prostate gland
13
blood
13
bodily fluid
13
musculature of body
13
pancreas
12
artery
12
eye
11
bone element
11
extraembryonic component
8
bronchus
8
embryo
8
lymphatic vessel
8
mammary gland
6
liver
5
heart
4
bone marrow
4
esophagus
4
gonad
4
intestine
4
large intestine
4
mouth
4
placenta
4
spinal cord
4
testis
3
lymphoid tissue
1
adipose tissue
0
pericardium
Life stage
22
adult
9
embryonic
4
unknown
1
fetal
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR464YWC
released
Annotation file set
: Candidate regulatory elements for BSS01386 NT2-D1 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR598KKZ
released
Annotation file set
: Target gene predictions for BSS01386 NT2-D1 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549AED
released
Annotation file set
: Chromatin states for BSS01386 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR260HPP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE NT2/D1
Lab:
AMP-T2D consortium
Project:
AMP