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Annotation type
4
target gene predictions
Annotation Category
4
Target gene links
Annotation type Category
4
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
tissue
Biosample term
2
hepatocyte
1
HepG2
1
liver
Organ
59
epithelium
31
connective tissue
14
intestine
14
pancreas
11
brain
10
pituitary gland
10
skin of body
9
musculature of body
8
large intestine
7
heart
7
lung
6
adrenal gland
6
stomach
5
embryo
5
mammary gland
4
blood
4
bodily fluid
4
liver
4
vasculature
3
adipose tissue
3
blood vessel
3
extraembryonic component
3
limb
3
small intestine
3
uterus
2
artery
2
esophagus
2
gonad
2
ovary
2
prostate gland
2
thyroid gland
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
penis
1
placenta
1
spinal cord
1
spleen
1
thymus
1
vein
Date released
3
May, 2021
1
November, 2021
Software used
49
macs
47
r
18
chromhmm
9
encode-ccres
9
salmon
4
abc
4
deltasvm
1
bimbam
1
chicago
1
cisgenome
1
deseq2
1
e-range
1
eigenmt
1
emmax
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
haploview
1
hiccups
1
mach2qtl
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
snap
1
unknown
Lab
3
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
organ_slims!
penis
Showing 4 of 4 results
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Download
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR494KQG
released
Annotation file set
: enhancer-gene predicton of liver-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP