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Annotation type
4
variant allelic effects
Annotation Category
4
Genetic variant effects
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2
hepatocyte
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
Organ
41
epithelium
17
brain
16
connective tissue
16
kidney
15
vasculature
11
pancreas
10
heart
9
blood vessel
8
limb
7
musculature of body
4
artery
4
liver
3
adipose tissue
3
intestine
3
ureter
2
esophagus
2
eye
2
nerve
2
stomach
1
adrenal gland
1
bronchus
1
lung
1
mammary gland
1
prostate gland
1
skin of body
1
thyroid gland
1
vein
Life stage
1
adult
1
fetal
Date released
3
May, 2020
1
February, 2024
Software used
49
macs
47
r
18
chromhmm
9
encode-ccres
9
salmon
4
abc
4
deltasvm
4
qTLtools
3
deseq2
1
bimbam
1
chicago
1
cisgenome
1
e-range
1
eigenmt
1
emmax
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
haploview
1
hiccups
1
mach2qtl
1
nospecificsoft_customcode
1
rasqual
1
snap
1
unknown
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
Collection Tags
4
DGA
1
T2DKP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR134FAU
released
Annotation file set
: Variant allelic effects of hepatic stellate cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR438ODC
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver fetal ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP