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Schema
Clear Filters
Assay category
335
DNA binding
116
Transcription
20
DNA accessibility
3
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Assay
335
ChIP-seq
112
total RNA-seq
16
ATAC-seq
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
WGBS
1
RRBS
1
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Project
482
AMP
RFA
462
AMP
20
AMP2
Experiment status
482
released
Genome assembly (visualization)
373
hg19
317
GRCh38
Organism
482
Homo sapiens
Target of assay
209
transcription factor
64
control
61
histone
61
histone modification
56
recombinant protein
37
RNA binding protein
37
narrow histone mark
24
broad histone mark
13
chromatin remodeller
2
other context
2
other post-translational modification
Biosample type
251
cell line
213
tissue
9
in vitro differentiated cells
9
primary cell
Organ
571
pancreas
482
liver
410
connective tissue
286
adipose tissue
276
epithelium
238
heart
209
kidney
180
brain
140
vasculature
137
blood vessel
102
bone element
84
artery
80
limb
57
musculature of body
39
blood
39
bodily fluid
37
eye
28
nerve
22
embryo
15
spleen
14
lung
13
vein
12
ureter
11
skeleton
4
gonad
4
ovary
2
intestine
2
pituitary gland
1
esophagus
1
large intestine
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Life stage
248
child
151
unknown
71
adult
15
embryonic
Available data
409
bam
371
bigWig
280
fastq
269
bed narrowPeak
218
bigBed narrowPeak
104
tsv
52
tagAlign
35
bed broadPeak
35
bigBed broadPeak
10
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hdf5
1
hic
1
vcf
Platform
156
Illumina HiSeq 2000
39
Illumina Genome Analyzer IIx
37
Illumina HiSeq 2500
35
Illumina Genome Analyzer
11
Illumina HiSeq 4000
4
MiSeq
3
Illumina Genome Analyzer IIe
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer II
1
Illumina Genome Analyzer I
Run type
236
single-ended
44
paired-ended
Read length (nt)
73
76
72
36
59
50
30
40
29
100
8
27
4
25
4
33
3
35
3
101
3
200
2
74
1
32
Mapped read length (nt)
1
36
1
50
Library insert size (nt)
1
150-250
Library made from
368
DNA
114
RNA
Date released
199
November, 2017
115
May, 2020
35
December, 2017
33
August, 2017
27
November, 2018
26
May, 2022
23
August, 2021
6
July, 2019
4
October, 2019
3
February, 2021
3
January, 2019
2
December, 2019
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Lab
436
AMP-T2D consortium
26
Karen Mohlke, UNC
20
Bing Ren, UCSD
Replication type
251
isogenic
219
unreplicated
12
anisogenic
Audit category:
14
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
15
inconsistent control read length
3
inconsistent control run_type
type!
Software
Showing 8 of 482 results
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Experiment
DSR221TGL
released
total RNA-seq
of liver
Homo sapiens
liver male adult (50 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR967BUK
released
total RNA-seq
of liver
Homo sapiens
liver female adult (35 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR612DNL
released
total RNA-seq
of liver
Homo sapiens
liver female child (17 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR542HFD
released
total RNA-seq
of liver
Homo sapiens
liver male adult (28 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR394MMI
released
ATAC-seq
of liver
Homo sapiens
liver male adult (58 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR130UIY
released
ATAC-seq
of liver
Homo sapiens
liver female adult (50 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR814ZES
released
ATAC-seq
of liver
Homo sapiens
liver male adult (28 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR316AHQ
released
ATAC-seq
of liver
Homo sapiens
liver female child (7 years)
Lab:
Karen Mohlke, UNC
Project:
AMP