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Clear Filters
Annotation type
  • 7variant allelic effects
Annotation Category
  • 7Genetic variant effects
Annotation type Category
  • 5DNase-seq
  • 2snATAC-seq
Available data
  • 7bed bed3+
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
Organism
  • 7Homo sapiens
Biosample type
  • 4tissue
  • 3primary cell
Biosample term
  • 2 muscle of leg
  • 2skeletal muscle fiber
  • 1 hindlimb muscle
  • 1muscle of arm
  • 1skeletal muscle cell
Organ
  • 41epithelium
  • 17brain
  • 16connective tissue
  • 16kidney
  • 15vasculature
  • 11pancreas
  • 10heart
  • 9blood vessel
  • 8limb
  • 7musculature of body
  • 4artery
  • 4liver
  • 3adipose tissue
  • 3intestine
  • 3ureter
  • 2esophagus
  • 2eye
  • 2nerve
  • 2stomach
  • 1adrenal gland
  • 1bronchus
  • 1lung
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1thyroid gland
  • 1vein
Date released
  • 5May, 2020
  • 2February, 2024
Software used
  • 147r
  • 78encode-ccres
  • 75chromhmm
  • 40macs
  • 9abc
  • 7deltasvm
  • 7qTLtools
  • 5deeptools
  • 5samtools
  • 5umitools
  • 3deseq2
  • 2eigenmt
  • 2gtex_eqtl:V8
  • 2gtex_finemapping_eQTL:caveman
  • 2gtex_finemapping_eQTL:caviar
  • 2gtex_finemapping_eQTL:dapg
  • 2hiccups
  • 2rasqual
  • 1matrix-eQTL
  • 1nospecificsoft_customcode
Lab
  • 5AMP-T2D consortium
  • 2Bing Ren, UCSD
Project
  • 7AMP
Collection Tags
  • 7DGA
  • 2 T2DKP
RFA
  • 7AMP

Showing 7 of 7 results

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  • FileSet

    DSR776HHT

    released

    Annotation file set: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR640ZDY

    released

    Annotation file set: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR733CJM

    released

    Annotation file set: Genetic variants with deltaSVM predictions in skeletal muscle leg DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR758LLX

    released

    Annotation file set: Genetic variants with deltaSVM predictions in skeletal muscle hindlimb DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR227DAE

    released

    Annotation file set: Genetic variants with deltaSVM predictions in skeletal muscle forelimb DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR592EHG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR960ERR

    released

    Annotation file set: Genetic variants in deltaSVM predictions in skeletal muscle arm DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
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