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Annotation type
6
eQTL
1
Fine-mapped variants
Annotation Category
6
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
7
RNA-seq
Available data
4
bed bed3+
3
tsv
File set status
7
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
3
skeletal muscle
1
esophagus muscularis mucosa
1
skeletal muscle tissue
1
type I muscle cell
1
type II muscle cell
Organ
17
brain
17
connective tissue
10
pancreas
9
adipose tissue
9
blood vessel
9
vasculature
7
musculature of body
6
artery
6
blood
6
bodily fluid
4
liver
3
esophagus
3
gonad
3
heart
3
intestine
3
skin of body
2
large intestine
2
limb
2
testis
1
adrenal gland
1
breast
1
epithelium
1
extraembryonic component
1
eye
1
kidney
1
lung
1
mouth
1
nerve
1
ovary
1
pituitary gland
1
placenta
1
prostate gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thyroid gland
1
uterus
1
vagina
Life stage
4
adult
Date released
3
March, 2025
2
February, 2024
1
February, 2021
1
January, 2022
Software used
147
r
78
encode-ccres
75
chromhmm
40
macs
9
abc
7
deltasvm
7
qTLtools
5
deeptools
5
samtools
5
umitools
3
deseq2
2
eigenmt
2
gtex_eqtl:V8
2
gtex_finemapping_eQTL:caveman
2
gtex_finemapping_eQTL:caviar
2
gtex_finemapping_eQTL:dapg
2
hiccups
2
rasqual
1
matrix-eQTL
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Project
7
AMP
Collection Tags
3
T2DKP
3
DGA
3
STARNET
1
T1D
1
T2D
1
eQTLCatalogue
RFA
5
AMP
2
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR443SJJ
released
Annotation file set
: This file contains fine-mapping results for cis-eQTLs, identifying likely causal variants from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR820CRJ
released
Annotation file set
: This file includes eQTLs that regulate gene expression from distant locations from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR906CZN
released
Annotation file set
: This file contains eQTLs that regulate nearby gene expression from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493GNB
released
Annotation file set
: esophagus muscularis eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259PWV
released
Annotation file set
: Genetic regulators (quantitative trait loci; QTLs) of expression (eQTLs) of human skeletal muscle from FUSION study
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP