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Clear Filters
Annotation type
  • 2candidate regulatory elements
  • 2chromatin state
  • 2target gene predictions
  • 1eQTL
Annotation Category
  • 4cis-regulatory elements
  • 2Target gene links
  • 1Genetic variant effects
Annotation type Category
  • 4ChIP-seq
  • 4DNase-seq
  • 1RNA-seq
Available data
  • 5bed bed3+
  • 2bed bed9
File set status
  • 7released
Genome assembly (visualization)
  • 5GRCh38
  • 4hg19
Organism
  • 7Homo sapiens
Biosample type
  • 7tissue
Biosample term
  • 7vagina
Organ
  • 3318blood
  • 2819vasculature
  • 2801bodily fluid
  • 2799blood vessel
  • 2654vein
  • 764brain
  • 585epithelium
  • 404kidney
  • 395heart
  • 383connective tissue
  • 299lung
  • 245intestine
  • 239musculature of body
  • 226skin of body
  • 213pancreas
  • 193liver
  • 158large intestine
  • 151embryo
  • 147limb
  • 142eye
  • 113adipose tissue
  • 111muscle organ
  • 108extraembryonic component
  • 92stomach
  • 83uterus
  • 76mammary gland
  • 73adrenal gland
  • 72bone element
  • 71thymus
  • 68artery
  • 65placenta
  • 60__MARKER__
  • 60prostate gland
  • 59small intestine
  • 50spleen
  • 47ureter
  • 46gonad
  • 46lymph node
  • 44penis
  • 38thyroid gland
  • 32esophagus
  • 32spinal cord
  • 23ovary
  • 22testis
  • 17nerve
  • 16skeleton
  • 14lymphatic vessel
  • 13lymphoid tissue
  • 12bronchus
  • 12mouth
  • 12pituitary gland
  • 11bone marrow
  • 10breast
  • 8urinary bladder
  • 7tongue
  • 7vagina
  • 5trachea
  • 2nose
  • 1embryonic structure
  • 1gallbladder
Life stage
  • 4adult
Date released
  • 2February, 2021
  • 2July, 2026
  • 2September, 2022
  • 1January, 2022
Software used
  • r
  • 2chromhmm
  • 2encode-ccres
  • 1qTLtools
Lab
  • 7AMP-T2D consortium
Project
  • 7AMP
Collection Tags
  • 2ENCODE
  • 2ENCODE-rE2G
  • 2EpiMap
  • 1T1D
  • 1T2D
  • 1eQTLCatalogue
RFA
  • 7AMP
software_used.software.name!
  • r

Showing 7 of 7 results

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  • FileSet

    DSR937304

    released

    Annotation file set: Target gene predictions for vagina (UBERON:0000996) derived from ENCODE-rE2G (ENCSR738AUI).
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR241640

    released

    Annotation file set: Target gene predictions for vagina (UBERON:0000996) derived from ENCODE-rE2G (ENCSR123AKF).
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR065OYN

    released

    Annotation file set: Chromatin states for BSS01887 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR213CWJ

    released

    Annotation file set: Chromatin states for BSS01886 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR221QNR

    released

    Annotation file set: vagina eQTL of studay GTEx from eQTL Catalogue
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR460MOH

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE vagina
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR860UKY

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE vagina
    Lab: AMP-T2D consortium
    Project: AMP
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