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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X scRNA-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
3
mtx
2
h5ad
1
tsv
File set status
4
released
Organism
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
3
islet of Langerhans
1
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
3
pancreas
1
blood
1
tissues
Organ
3
pancreas
1
blood
1
bodily fluid
Date released
2
October, 2024
1
August, 2021
1
November, 2021
Lab
2
Franck Mauvais-Jarvis Lab
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
community
1
ENCODE
1
T1D
RFA
2
community
1
ENCODE3
1
T1D
organism.scientific_name!
Homo sapiens
Showing 4 of 4 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D