Showing 10 of 10 results

• Publication

  released

  The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

  Tabula Sapiens Consortium*; Robert C Jones, Jim Karkanias, Mark A Krasnow, et al.

  Science. 2022-05-13;376(6594):eabl4896.

  • doi:10.1126/science.abl4896
  • PMID:35549404

  Available supplemental data: website

  URL: http://tabula-sapiens-portal.ds.czbiohub.org/

  Data summary: The entire dataset can be explored interactively at http://tabula-sapiens-portal.ds.czbiohub.org/.

  Available supplemental data: website

  URL: https://doi.org/10.5281/zenodo.6069683

  Data summary: The code used for the analysis is available from Zenodo (https://doi.org/10.5281/zenodo.6069683).

  Available supplemental data: website

  URL: https://doi.org/10.6084/m9.figshare.14267219

  Data summary: Gene counts and metadata are available from figshare…See more

  Available supplemental data: website

  URL: https://registry.opendata.aws/tabula-sapiens/

  Data summary: The raw data files are available from a public AWS S3 bucket…See more

  Available supplemental data: website

  URL: https://doi.org/10.6084/m9.figshare.14962947

  Data summary: The histology images are available from figshare (https://doi.org/10.6084/m9.figshare.14962947).

  Available supplemental data: website

  URL: https://doi.org/10.6084/m9.figshare.14977281

  Data summary: SpliZ scores are available from figshare (https://doi.org/10.6084/m9.figshare.14977281).

• Publication

  released

  Integration of genomics and transcriptomics predicts diabetic retinopathy susceptibility genes

  Andrew D Skol, Segun C Jung, Ana Marija Sokovic, et al.

  eLife. 2020-11-09;:e59980.

  • doi:10.7554/eLife.59980
  • PMCID:PMC7728435
  • PMID:33164750

  URL: https://datadryad.org/stash/dataset/doi:10.5061/dryad.zkh18938j

• Publication

  released

  Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

  Allen Wang, Joshua Chiou, Olivier B Poirion, et al.

  eLife. 2020-11-09;9:e62522.

  • doi:10.7554/eLife.62522
  • PMID:33164753

  Available supplemental data: website

  File format: other format

  URL: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001961.v1.p1

  Data summary: sci-ATAC-seq data of human lung samples: dbGaP: phs001961

• Publication

  released

  CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder

  Gabriel E. Hoffman, Jaroslav Bendl, Georgios Voloudakis, et al.

  Sci Data. 2019-09-24;6(1):180.

  • doi:10.1038/s41597-019-0183-6
  • PMID:31551426
  • PMCID:PMC6760149

• Publication

  released

  The single-cell transcriptomic landscape of early human diabetic nephropathy

  Parker C Wilson, Haojia Wu, Yuhei Kirita, et al.

  Proc Natl Acad Sci U S A. 2019-09-24;116(39):19619-19625.

  • PMID:31506348
  • PMCID:PMC6765272
  • doi:10.1073/pnas.1908706116

• Publication

  released

  Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock

  Judhajeet Ray, Paul R Munn, Anniina Vihervaara, et al.

  Proc Natl Acad Sci U S A. 2019-09-24;116(39):19431-19439.

  • doi:10.1073/pnas.1901244116
  • PMID:31506350
  • PMCID:PMC6765289

  Available supplemental data: website

  Data summary: Hi-C. Human K562 and Drosophila S2 cells were subjected to HS or not (NHS) and cross-linked with…See more

• Publication

  released

  Gain-of-Function Mutations of SLC16A11 Contribute to the Pathogenesis of Type 2 Diabetes

  Yongxu Zhao, Zhuanghui Feng, Yongxian Zhang, et al.

  Cell Rep. 2019-01-22;26(4):884-892.e4.

  • doi:10.1016/j.celrep.2018.12.100
  • PMID:30673611

• Publication

  released

  A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

  Anthony D. Schmitt, Ming Hu, Inkyung Jung, et al.

  Cell Reports. 2016-11-15;17(8):2042-2059.

  • doi:10.1016/j.celrep.2016.10.061
  • PMID:27851967

  URL: https://www.cell.com/cell-reports/fulltext/S2211-1247(16)31481-4

• Publication

  released

  CD8 + T Cells from Human Neonates Are Biased toward an Innate Immune Response

  Ariel O Galindo-Albarrán, Oscar H López-Portales, Darely Y Gutiérrez-Reyna, et al.

  Cell Rep. 2016-11-15;17(8):2151-2160.

  • doi:10.1016/j.celrep.2016.10.056
  • PMID:27851975

• Publication

  released

  Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells

  Marco De Simone, Alberto Arrigoni, Grazisa Rossetti, et al.

  Immunity. 2016-11-15;45(5):1135-1147.

  • doi:10.1016/j.immuni.2016.10.021
  • PMID:27851914
  • PMCID:PMC5119953