Showing 12 of 12 results

• Software

  released

  lrna-signals-stranded — source

  Signal generation from stranded alignments for long-RNA-seq ENCODE uniform processing pipeline.

  Software type: file format conversion

• Software

  released

  srna-signals — source

  Signal generation for small-RNA-seq ENCODE uniform processing pipeline.

  Software type: file format conversion

• Software

  released

  rampage-signals — source

  Signal generation for Rampage ENCODE uniform processing pipeline.

  Software type: file format conversion

• Software

  released

  nanostringToBed — source

  This is a custom script to convert the results of Nanostring Nsolver from mirbase identifiers to genomic coordinates in BED and bigBED format.

  Software type: file format conversion

• Software

  released

  make_bigwig_files.py — source

  converts bam to bigWig

  Software type: file format conversion

• Software

  released

  wigToBigWig — source

  The bigWig format is for display of dense, continuous data that will be displayed in the Genome Browser as a graph. BigWig files are created initially from wiggle (wig) type files, using the program wigToBigWig. The resulting bigWig files are in an indexe

  Software type: file format conversion

• Software

  released

  bedToBigBed — source

  bedToBigBed takes a standard bed file or a non-standard bed file with associated .as file to create a compressed bigBed version. Description of Big Binary Indexed (BBI) files and visualization of next-generation sequencing experiment results explained by

  Software type: file format conversion

• Software

  released

  lrna-signals-unstranded — source

  Signal generation from unstranded alignments for long-RNA-seq ENCODE uniform processing pipeline.

  Software type: file format conversion

• Software

  released

  BEDOPS — source

  Performs common genomic analysis tasks and offers improved flexibility, scalability and execution time characteristics over previously published packages. The suite includes a utility to compress large inputs into a lossless format that can provide greate

  Software type: file format conversion

• Software

  released

  bedGraphToBigWig — source

  Convert bedGraph to bigWig file. Description of Big Binary Indexed (BBI) files and visualization of next-generation sequencing experiment results explained by W.J. Kent, PMCID: PMC2922891

  Software type: file format conversion

• Software

  released

  lrna-signals

  Signal generation for long-RNA-seq ENCODE uniform processing pipeline.

  Software type: file format conversion

• Software

  released

  bigWigToWig — source

  The binary bigWig format can be converted to the text based wig or bedGraph formats using this utility.

  Software type: file format conversion