Search – Common Metabolic Diseases Genome Atlas

Software
released
dnase-align-bwa-pe — source
Aligns paired-end reads by BWA for DNase ENCODE uniform processing pipeline.
Software type: aligner
Software
released
dnase-align-bwa-se — source
Aligns single-end reads by BWA for DNase ENCODE uniform processing pipeline.
Software type: aligner
Software
released
LongRanger
Long Ranger is a set of analysis pipelines that processes Chromium sequencing output to align reads and call and phase SNPs, indels, and structural variants. These pipelines combine Chromium-specific algorithms with widely used components such as BWA, Fre
Software type: aligner, variant annotation
Software
released
NextGenMap — source
NextGenMap is a flexible and fast read mapping program that is more than twice as fast as BWA while achieving a mapping sensitivity similar to Stampy.
Software type: aligner
Software
released
BWA — source
BWA is a software package for mapping low-divergent sequences based on a Burrows-Wheeler index against a large reference genome, such as the human genome. Publications for the short read alignment component is found at PMID: 19451168, while PMID: 2008050
Software type: aligner