Showing 7 of 7 results

• Software

  released

  bigWigAverageOverBed — source

  Compute average score of big wig over each bed, which may have introns.

• Software

  released

  TIP — source

  Predicts the targets of transcription factors using the data from ChIP-seq experiments.

• Software

  released

  ChromHMM — source

  Learns and characterizes chromatin states.

  Software type: genome segmentation

• Software

  released

  Segtools — source

  A Python package that analyzes genomic segmentations. The software efficiently calculates a variety of summary statistics and produces corresponding publication quality visualizations. The overall goal of Segtools is to provide a bird's-eye view of comple

  Software type: genome segmentation

• Software

  released

  CAGT (Clustering AGgregation Tool) — source

  Deciphers the heterogeneity and diversity of profiles of functional signals (e.g., chromatin mark ChIP-seq signal) centered at a collection of sites (e.g., TSSs or TF binding sites) in a genome. Rather than averaging the profiles over all the anchor sites

  Software type: genome segmentation

• Software

  released

  ACT — source

  Performs aggregation and correlation analyses of genomic tracks.

• Software

  released

  Segway — source

  Uses a machine learning method to analyze multiple tracks of functional genomics data, searching for recurring patterns. The software automatically partitions the genome into non-overlapping segments and assigns each segment a label. The resulting annot

  Software type: genome segmentation