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Software type
variant annotation
1
aligner
1
other
Purpose in project
37
RNA-seq
22
DNase-seq
12
community resource
11
ChIP-seq
8
data QC
7
integrative analysis
3
variant analysis
1
ATAC-seq
1
PAS-seq
software_type!
variant annotation
Showing 3 of 3 results
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Software
released
NextGenMap
—
source
NextGenMap is a flexible and fast read mapping program that is more than twice as fast as BWA while achieving a mapping sensitivity similar to Stampy.
Software type:
aligner
Software
released
AlleleSeq
—
source
Quantifies the allele-specific binding and expression at the SNP sites using the RNA-seq, ChIP-seq datasets, and diploid genome sequences.
Software
released
SeparateReadpairs
—
source
Splits up the interleaved file into two valid paired fastqs.
Software type:
other