Showing 4 of 4 results

• Software

  released

  Spark — source

  Spark is an interactive pattern discovery and visualization approach designed with epigenomic data in mind. Spark can reveal both known and novel epigentic signatures.

  Software type: database

• Software

  released

  ENCODE-motifs — source

  A database that uncovers the molecular basis of TF binding in the human genome based on regulatory motif analysis of all Transcription Factors (TFs) grouped by family. This allows browsing of all known motifs for each factor, curated from TRANSFAC, Jaspar

  Software type: database

• Software

  released

  RegulomeDB — source

  Identifies DNA features and regulatory elements in non-coding regions of the human genome. One can enter dbSNP IDs, BED files, VCF files, or GFF3 files. A score is returned assessing the evidence for regulatory potential. Clicking on the score reveals the

  Software type: database, variant annotation

• Software

  released

  Regulatory Elements Database — source

  Using an intuitive interface, you can 1) identify DNaseI-hypersensitive sites (DHS) within a genomic region of interest, 2) predict the target gene for DHS of interest, 3) predict the DHS that regulate a gene of interest, 4) identify clusters of similarly

  Software type: database