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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
HCT-116 cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
3
intestine
3
large intestine
Date released
1
February, 2021
1
June, 2020
1
May, 2021
October, 2022
Software used
2
macs
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type!
Fine-mapped variants
month_released!
October, 2022
Showing 3 of 3 results
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Download
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP