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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
cell line
1
primary cell
Biosample term
14
prostate gland
12
epithelial cell of prostate
10
22Rv1
7
LNCaP clone FGC
7
PC-3
7
RWPE1
6
LNCAP
4
C4-2B
4
RWPE2
4
VCaP cell
1
VCaP
1
luminal epithelial cell of prostatic duct
1
prostate
Organ
7
prostate gland
1
epithelium
Life stage
2
adult
Date released
4
February, 2021
1
February, 2024
1
June, 2020
1
May, 2021
Software used
3
macs
2
encode-ccres
1
abc
1
deltasvm
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
Fine-mapped variants
Showing 7 of 7 results
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FileSet
DSR718TWX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543HLI
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835IJD
released
Annotation file set
: Histone modifications annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144WDI
released
Annotation file set
: Binding sites annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR563FIF
released
Annotation file set
: enhancer-gene predicton of LNCAP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR670LSP
released
Annotation file set
: Variant allelic effects annotation of Luminal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR475PYM
released
Annotation file set
: Accessible chromatin annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP