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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
113
monocyte
59
HeLa-S3
52
H1-hESC
48
heart
43
stomach
42
brain
42
kidney
40
A549
39
CD8-positive, alpha-beta T cell
38
islet of Langerhans
36
neural progenitor cell
35
lung
33
K562
33
adrenal gland
33
muscle of arm
33
placenta
33
small intestine
32
liver
29
muscle of leg
28
large intestine
27
thymus
26
common myeloid progenitor, CD34-positive
26
hepatocyte
26
left lung
25
endothelial cell
25
muscle of back
23
CD14-positive monocyte
23
hematopoietic multipotent progenitor cell
22
B cell
22
adipose tissue
22
right lung
21
right kidney
20
breast cancer cell
20
epithelial cell of proximal tubule
19
HFFc6
19
heart left ventricle
19
macrophage
19
renal cortex interstitium
19
renal pelvis
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
regulatory T cell
18
spinal cord
17
glomerular endothelial cell
17
pancreatic ductal cell
16
MCF-7
16
adipocyte
16
induced pluripotent stem cell
16
keratinocyte
16
subcutaneous adipose tissue
15
EndoC_BH1
15
body of pancreas
15
fibroblast
15
spleen
15
tibial nerve
14
CD8-positive, alpha-beta memory T cell
14
T-helper 1 cell
14
T-helper 17 cell
14
caudate nucleus
14
coronary artery
13
GM12878
13
natural killer cell
13
smooth muscle cell
13
substantia nigra
13
trophoblast cell
12
HepG2
12
T cell
12
mesenchymal stem cell
12
mononuclear cell
12
neuroblastoma cell
12
right atrium auricular region
12
tibial artery
11
ascending aorta
11
endothelial cell of umbilical vein
11
frontal cortex
11
lymphoblastoid cell line
11
neutrophil
11
pancreas
11
sigmoid colon
10
cardiac muscle cell
10
cerebellum
10
embryonic stem cell
10
fibroblast of lung
10
foreskin fibroblast
10
foreskin keratinocyte
10
gastric cancer cell
10
heart right ventricle
10
mammary gland epithelial cell
10
omental fat pad
10
ovary
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
psoas muscle
10
retina
10
skeletal muscle myoblast
10
skeletal muscle tissue
10
thyroid gland
9
H9
9
Rhabdomyosarcoma
9
aorta
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
left cardiac atrium
9
liposarcoma
9
osteoblast
9
pancreatic beta cell
9
pancreatic delta cell
9
putamen
9
testis
8
Ammon's horn
8
B-lymphoblastoid cell line
8
T-helper 2 cell
8
endothelial cell of hepatic sinusoid
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
layer of hippocampus
8
lymphocyte
8
pericyte cell
8
pituitary stalk
8
temporal lobe
8
transverse colon
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
endocrine pancreas
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mammary epithelial cell
7
mature neutrophil
7
muscle of trunk
7
pancreatic alpha cell
7
prostate gland
6
22Rv1
6
CD4-positive, alpha-beta T cell
6
Chondroid Chordoma
6
GM19238
6
GM19239
6
GM19240
6
IMR-90
6
Jurkat
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
endodermal cell
6
epithelial cell of prostate
6
glomerular visceral epithelial cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
skeletal muscle satellite cell
6
upper lobe of left lung
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
accessible chromatin
candidate regulatory elements
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP