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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
4
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
64
heart
63
stomach
55
kidney
51
brain
51
lung
50
muscle of arm
46
adrenal gland
46
small intestine
44
placenta
42
large intestine
41
muscle of back
41
muscle of leg
39
left lung
37
liver
36
thymus
35
islet of Langerhans
33
right lung
31
right kidney
30
renal cortex interstitium
29
renal pelvis
27
left kidney
25
spleen
23
adipose tissue
22
heart left ventricle
22
spinal cord
17
sigmoid colon
16
body of pancreas
15
ovary
15
psoas muscle
14
pancreas
14
subcutaneous adipose tissue
13
gastrocnemius medialis
13
heart right ventricle
13
muscle of trunk
13
retina
13
skeletal muscle tissue
13
testis
13
thyroid gland
13
tibial nerve
13
transverse colon
12
caudate nucleus
12
chorionic villus
12
layer of hippocampus
12
upper lobe of left lung
11
endocrine pancreas
10
Peyer's patch
10
omental fat pad
10
prostate gland
10
substantia nigra
10
temporal lobe
9
aorta
9
coronary artery
9
left renal cortex interstitium
9
left renal pelvis
9
right atrium auricular region
9
right renal pelvis
8
ascending aorta
8
breast epithelium
8
cerebellum
8
colonic mucosa
8
esophagus squamous epithelium
8
lower leg skin
8
right renal cortex interstitium
8
tibial artery
8
trophoblast
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
esophagus muscularis mucosa
7
frontal cortex
7
mucosa of rectum
7
parathyroid adenoma
7
stomach smooth muscle
7
thoracic aorta
7
vagina
6
angular gyrus
6
chorion membrane
6
eye
6
gastroesophageal sphincter
6
muscle layer of colon
6
muscle layer of duodenum
6
putamen
6
subcutaneous abdominal adipose tissue
6
tongue
6
uterus
5
Ammon's horn
5
cartilage tissue
5
globus pallidus
5
left cardiac atrium
5
limb
5
midbrain
5
occipital lobe
5
right cardiac atrium
5
urinary bladder
4
Brodmann (1909) area 46
4
bone tissue
4
middle frontal gyrus
4
right lobe of liver
4
superior temporal gyrus
4
umbilical cord
3
amnion
3
cerebellar cortex
3
femur
3
germinal matrix
3
medulla oblongata
3
mucosa of stomach
3
pons
3
rectum smooth muscle tissue
3
suprapubic skin
3
visceral abdominal adipose tissue
2
muscle of leg
2
amygdala
2
arm bone
2
blood
2
breast carcinoma
2
cerebellum (Hemisphere)
2
chorion
2
cortex of kidney
2
dorsolateral prefrontal cortex
2
embryonic facial prominence
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
germinal center
2
hypothalamus
2
inferior parietal cortex
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
nucleus accumbens
2
placental basal plate
2
prefrontal cortex
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of body
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
C1 segment of cervical spinal cord
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
corneal epithelium
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
gastrocnemius medialis(Muscle - Skeletal)
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
left ventricle myocardium
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
minor salivary gland
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
Organ
3
intestine
3
large intestine
3
musculature of body
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
Software used
2
r
1
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
assembly!
GRCh38
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR810KDL
released
Annotation file set
: Candidate regulatory elements for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055KZV
released
Annotation file set
: Target gene predictions for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP