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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
110
monocyte
85
heart
82
stomach
71
kidney
69
brain
67
lung
66
muscle of arm
64
HeLa-S3
61
A549
61
small intestine
60
adrenal gland
58
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
47
thymus
46
CD8-positive, alpha-beta T cell
44
liver
44
right lung
42
hematopoietic multipotent progenitor cell
41
neural progenitor cell
41
right kidney
40
K562
39
renal cortex interstitium
38
renal pelvis
36
B cell
36
left kidney
35
islet of Langerhans
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
31
CD14-positive monocyte
30
heart left ventricle
30
spleen
29
hepatocyte
28
adipose tissue
25
MCF-7
25
endothelial cell
24
body of pancreas
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
sigmoid colon
22
trophoblast cell
21
foreskin keratinocyte
21
regulatory T cell
21
tibial nerve
20
breast cancer cell
20
mononuclear cell
19
T-helper 1 cell
19
adipocyte
19
caudate nucleus
19
glomerular endothelial cell
19
keratinocyte
19
psoas muscle
18
HFFc6
18
T-helper 17 cell
18
foreskin fibroblast
18
natural killer cell
18
ovary
17
coronary artery
17
endothelial cell of umbilical vein
17
heart right ventricle
17
muscle of trunk
17
pancreatic ductal cell
17
retina
17
subcutaneous adipose tissue
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
mesenchymal stem cell
16
omental fat pad
16
skeletal muscle tissue
16
thyroid gland
16
transverse colon
15
EndoC_BH1
15
GM12878
15
layer of hippocampus
15
pancreas
15
right atrium auricular region
15
smooth muscle cell
15
substantia nigra
15
testis
15
tibial artery
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
H9
14
HepG2
14
T cell
14
ascending aorta
14
cardiac muscle cell
14
cerebellum
14
endocrine pancreas
14
fibroblast
14
mammary gland epithelial cell
14
neutrophil
14
skeletal muscle myoblast
13
T-helper 2 cell
13
aorta
13
fibroblast of cardiac tissue
13
neurosphere
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
neuroblastoma cell
11
frontal cortex
11
macrophage
11
mammary epithelial cell
11
osteoblast
11
prostate gland
10
22Rv1
10
Ammon's horn
10
embryonic stem cell
10
epithelial cell of prostate
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
putamen
10
right renal cortex interstitium
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus squamous epithelium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
thoracic aorta
9
trophoblast
8
B-lymphoblastoid cell line
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
endothelial cell of hepatic sinusoid
8
esophagus
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle satellite cell
8
tongue
8
vagina
7
GM12865
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
glomerular visceral epithelial cell
7
hepatic stellate cell
7
kidney tubule cell
7
limb
7
mature neutrophil
7
mesendoderm
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
HAP-1
6
HT-29
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
accessible chromatin
month_released!
January, 2022
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP