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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
71
brain
20
caudate nucleus
18
substantia nigra
16
layer of hippocampus
15
cerebellum
14
frontal cortex
14
temporal lobe
13
putamen
10
Ammon's horn
10
SK-N-SH
10
angular gyrus
10
pituitary stalk
9
SK-N-DZ
9
cingulate gyrus
8
choroid plexus epithelial cell
7
SK-N-MC
7
amygdala
7
hypothalamus
7
nucleus accumbens
6
BE(2)-C
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
6
midbrain
5
Daoy
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
middle frontal gyrus
4
A172
4
H54
4
M059J
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
medulla oblongata
4
medulloblastoma
4
pons
3
U-87 MG
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
2
cardiac fibroblast
2
brain pericyte
2
middle frontal area 46
2
pituitary gland
2
prefrontal cortex
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
5
brain
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
Showing 5 of 5 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR857WOI
released
Annotation file set
: Chromatin states for BSS00091 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP