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Citing CMDGA
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Annotation type
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
62
small intestine
55
large intestine
22
sigmoid colon
18
transverse colon
13
Peyer's patch
10
colonic mucosa
9
duodenal mucosa
9
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
7
HT-29
6
HCT116
6
SW480
6
colon epithelial cell
4
rectum smooth muscle tissue
3
HCT-116 cell
3
RKO
3
enterocyte
2
enteric smooth muscle cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
small intestine goblet cell
Organ
1
epithelium
1
intestine
1
small intestine
Date released
1
November, 2021
Software used
1
abc
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_type!
accessible chromatin
Showing 1 of 1 results
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Download
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE