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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
89
heart
86
stomach
80
kidney
72
brain
68
lung
67
muscle of arm
63
HeLa-S3
63
small intestine
62
adrenal gland
60
A549
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
H1-hESC
52
left lung
50
CD8-positive, alpha-beta T cell
48
liver
47
thymus
45
right lung
43
islet of Langerhans
42
right kidney
40
B cell
40
renal cortex interstitium
40
renal pelvis
39
K562
39
retina
38
endothelial cell
36
left kidney
34
heart left ventricle
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
31
macrophage
30
adipose tissue
29
fibroblast
27
regulatory T cell
25
tibial nerve
24
body of pancreas
23
MCF-7
23
T-helper 1 cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
caudate nucleus
22
epithelial cell of proximal tubule
22
pericyte cell
21
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
21
pancreas
21
subcutaneous adipose tissue
20
coronary artery
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
19
foreskin keratinocyte
19
heart right ventricle
19
mononuclear cell
19
pancreatic ductal cell
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
muscle of trunk
17
omental fat pad
17
pancreatic acinar cell
17
pancreatic alpha cell
16
chorionic villus
16
keratinocyte
16
skeletal muscle tissue
16
testis
15
CD4-positive, alpha-beta T cell
15
H9
15
ascending aorta
15
cerebellum
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
frontal cortex
15
layer of hippocampus
15
neutrophil
15
pancreatic delta cell
14
GM12878
14
endocrine pancreas
14
osteoblast
14
putamen
14
upper lobe of left lung
13
HepG2
13
Peyer's patch
13
aorta
13
fibroblast of lung
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
skeletal muscle myoblast
11
breast cancer cell
11
breast epithelium
11
excitatory neuron
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
mammary gland epithelial cell
11
prostate gland
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
lymphoblastoid cell line
10
lymphocyte
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
9
22Rv1
9
SK-N-DZ
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
esophagus
9
parathyroid adenoma
9
tongue
9
trophoblast
9
vagina
8
Rhabdomyosarcoma
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
gastric cancer cell
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
amygdala
7
angular gyrus
7
cardiac muscle cell
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
kidney glomerular epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
neuroblastoma cell
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
HCT116
6
HEK293
6
IMR-90
6
MM.1S
6
WI38
6
anterior cingulate cortex
6
dermis lymphatic vessel endothelial cell
6
fibroblast of breast
6
hypothalamus
6
induced pluripotent stem cell
6
mature neutrophil
6
middle frontal gyrus
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
Date released
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
binding sites
biosample_type!
in vitro differentiated cells
Showing 1 of 1 results
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Download
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP