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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
54
HeLa-S3
51
CD8-positive, alpha-beta T cell
49
H1-hESC
42
islet of Langerhans
39
endothelial cell
38
kidney
35
neural progenitor cell
32
heart
31
macrophage
30
fibroblast
30
hepatocyte
30
retina
29
stomach
26
liver
24
brain
23
pancreatic ductal cell
22
EndoC_BH1
22
smooth muscle cell
21
K562
21
subcutaneous adipose tissue
20
B cell
20
adipocyte
20
adrenal gland
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
epithelial cell of proximal tubule
19
heart left ventricle
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
glomerular endothelial cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
17
placenta
17
regulatory T cell
16
induced pluripotent stem cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
muscle of back
15
pancreatic alpha cell
15
spleen
15
tibial nerve
14
T-helper 1 cell
14
astrocyte
14
coronary artery
14
embryonic stem cell
13
H9
13
caudate nucleus
13
excitatory neuron
13
left lung
13
natural killer cell
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
thymus
12
T cell
12
T-helper 17 cell
12
endothelial cell of umbilical vein
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
GM12878
11
adipose tissue
11
body of pancreas
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
mesenchymal stem cell
11
omental fat pad
11
osteoblast
11
putamen
11
spinal cord
11
tibial artery
10
cardiac muscle cell
10
frontal cortex
10
keratinocyte
10
lymphoblastoid cell line
10
pancreatic stellate cell
10
retinal pigment epithelial cell
10
right kidney
10
skeletal muscle satellite cell
9
Ammon's horn
9
Rhabdomyosarcoma
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
heart right ventricle
9
ovary
9
progenitor cell of endocrine pancreas
9
skeletal muscle myoblast
8
MCF-7
8
ascending aorta
8
erythroblast
8
gastric cancer cell
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
mammary epithelial cell
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
8
testis
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
HepG2
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin fibroblast
7
memory B cell
7
neuroblastoma cell
7
temporal lobe
6
A549
6
Chondroid Chordoma
6
SGBS preadipocytes
6
T-helper 2 cell
6
anterior cingulate cortex
6
aorta
6
cardiac precursors (cardiac muscle cell)
6
diffuse intrinsic pontine glioma
6
foreskin keratinocyte
6
hypothalamus
6
left kidney
6
lymphocyte
6
mature neutrophil
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
nucleus accumbens
6
sigmoid colon
6
trophoblast cell
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Jurkat
5
LNCAP
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Peyer's patch
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Proximal Tubule Epithelial Cell Segment 3
5
enterocyte
5
fibroblast of cardiac tissue
5
glutamatergic neuron
5
hepatic stellate cell
5
iPSC derived cell line
5
kidney interstitial cell
Life stage
1
embryonic
Date released
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
binding sites
month_released!
September, 2022
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP