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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
71
heart
65
kidney
65
stomach
61
HeLa-S3
59
brain
57
A549
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
47
placenta
46
neural progenitor cell
44
CD8-positive, alpha-beta T cell
44
muscle of leg
43
islet of Langerhans
42
large intestine
42
liver
40
common myeloid progenitor, CD34-positive
39
endothelial cell
39
left lung
39
muscle of back
38
B cell
38
K562
38
thymus
36
retina
35
hepatocyte
34
right lung
33
hematopoietic multipotent progenitor cell
32
right kidney
31
macrophage
30
fibroblast
30
renal pelvis
29
adipose tissue
29
renal cortex interstitium
28
heart left ventricle
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
left kidney
26
spinal cord
25
regulatory T cell
24
adipocyte
24
smooth muscle cell
24
spleen
23
pancreatic ductal cell
22
EndoC_BH1
22
T cell
22
pericyte cell
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
epithelial cell of proximal tubule
20
T-helper 1 cell
20
body of pancreas
20
caudate nucleus
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
19
HFFc6
19
MCF-7
19
coronary artery
19
subcutaneous adipose tissue
19
trophoblast cell
18
T-helper 17 cell
18
pancreas
18
pancreatic beta cell
18
right atrium auricular region
17
mononuclear cell
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
astrocyte
16
heart right ventricle
16
induced pluripotent stem cell
16
mesenchymal stem cell
16
ovary
15
fibroblast of cardiac tissue
15
frontal cortex
15
keratinocyte
15
pancreatic delta cell
15
substantia nigra
15
thyroid gland
14
T-helper 2 cell
14
ascending aorta
14
embryonic stem cell
14
endothelial cell of umbilical vein
13
GM12878
13
cerebellum
13
excitatory neuron
13
foreskin keratinocyte
13
gastrocnemius medialis
13
mammary gland epithelial cell
13
neutrophil
13
omental fat pad
13
osteoblast
13
transverse colon
12
HepG2
12
endocrine pancreas
12
muscle of trunk
12
putamen
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
12
skeletal muscle tissue
12
testis
11
Ammon's horn
11
aorta
11
breast cancer cell
11
chorionic villus
11
glomerular visceral epithelial cell
11
layer of hippocampus
11
skeletal muscle myoblast
10
H9
10
Peyer's patch
10
fibroblast of dermis
10
foreskin fibroblast
10
left cardiac atrium
10
lymphoblastoid cell line
10
lymphocyte
10
pancreatic stellate cell
10
upper lobe of left lung
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
fibroblast of lung
9
kidney tubule cell
9
progenitor cell of endocrine pancreas
9
skin fibroblast
9
temporal lobe
8
Rhabdomyosarcoma
8
cardiac muscle cell
8
colon epithelial cell
8
erythroblast
8
gastric cancer cell
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
naive T cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle fiber
8
thoracic aorta
8
trophoblast
7
22Rv1
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
amygdala
7
breast epithelium
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
limb
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuroblastoma cell
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
GM18507
6
GM19240
6
H7-hESC
6
SK-N-DZ
6
T47D
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
colonic mucosa
6
dermis lymphatic vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
epithelial cell of prostate
6
globus pallidus
6
hypothalamus
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mammary epithelial cell
6
mature neutrophil
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
nucleus accumbens
6
occipital lobe
6
right lobe of liver
6
right renal pelvis
6
superior temporal gyrus
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
Life stage
3
embryonic
Date released
3
September, 2022
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
binding sites
software_used.software.name!
encode-ccres
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP