Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
61
HeLa-S3
56
A549
50
H1-hESC
37
K562
21
EndoC_BH1
19
HFFc6
17
MCF-7
12
GM12878
11
HepG2
10
H9
10
pituitary stalk
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
lymphocyte
8
induced pluripotent stem cell
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-SH
7
lymphoblastoid cell line
6
22Rv1
6
KARPAS-422 cell
6
LNCaP clone FGC
6
T47D
6
iPSC derived cell line
5
GM18507
5
GM19240
5
H7-hESC
5
HAP-1
5
HCT116
5
HT-29
5
HUES8
5
IMR-90
5
LoVo cell
5
MM.1S
5
OCI-LY7
5
PC-9
4
A172
4
A673
4
ACHN
4
AG04449 cell
4
AG04450 cell
4
AG08396 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CMK
4
Caco-2 cell
4
Caki2
4
CyT49
4
Daoy
4
GM03348
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM19238
4
GM19239
4
GM23248
4
H4
4
HEK293
4
HL-60
4
HUES6
4
HuH-7
4
KBM-7
4
L1-S8
4
L1-S8R
4
LHCN-M2
4
M059J
4
MG63
4
NCI-H226 cell
4
NT2-D1 cell
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
iPS DF 19.11
3
8988T
3
ACC112
3
AG08395 cell
3
AG20443
3
C4-2B
3
COLO829
3
CWRU1
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM08714
3
GM12875
3
GM12891
3
GM12892
3
GM23338
3
H54
3
HEK293T
3
HK-2 cell
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES64
3
HuH-7.5
3
Jurkat
3
KMS-11
3
KOPT-K1
3
Loucy
3
NB4
3
NCI-H460 cell
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
RWPE2
3
SK-MEL-5
3
SU-DHL-6
3
U937
3
UCSF-4
3
VCaP cell
3
WI38
3
colon carcinoma
3
colon epithelial cell
3
foreskin fibroblast
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
iPS-NIHi11
3
iPS-NIHi7
3
medulloblastoma
3
renal cell carcinoma
3
urothelium cell line
2
BJAB cell
2
DG-75 cell
2
ESC derived cell line
2
HCT-116 cell
2
LNCAP
2
MCF 10A cell
2
MDA-MB-231 cell
2
MIN6
2
NCCIT cell
2
Rh-4 cell
2
SUDHL5
2
THP-1
2
U-266 cell
2
Z-138
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
glomerular visceral epithelial cell
2
macrophage
2
muscle
1
786-O cell
1
A-673 cell
1
B-lymphoblastoid cell line
1
BL-2 cell
1
COLO-829 cell
1
COLO205
1
D341 Med cell
1
ECC-1
1
G-401 cell
1
GM13976
1
GM13977
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM20000
1
GP5d
1
HAC cell
1
HBMEC cell
1
HGF
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuTu-80 cell
1
JVM-2 cell
1
Kasumi-1
Disease term
3
glioblastoma
Organ
4
brain
Life stage
3
adult
Date released
3
September, 2022
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
binding sites
month_released!
February, 2021
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR851DJA
released
Annotation file set
: Candidate regulatory elements for BSS01208 M059J from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR089JMK
released
Annotation file set
: Target gene predictions for BSS01208 M059J from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903HRQ
released
Annotation file set
: Chromatin states for BSS01208 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR949YBV
released
Annotation file set
: Accessible chromatin annotation for Neural M059J from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP