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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
115
monocyte
66
stomach
65
heart
60
HeLa-S3
57
kidney
53
brain
51
lung
51
muscle of arm
48
CD8-positive, alpha-beta T cell
48
small intestine
47
adrenal gland
45
placenta
43
H1-hESC
43
large intestine
43
muscle of leg
42
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
40
liver
39
left lung
36
neural progenitor cell
36
thymus
35
retina
34
B cell
34
right lung
33
K562
32
islet of Langerhans
32
right kidney
31
hematopoietic multipotent progenitor cell
31
renal cortex interstitium
31
renal pelvis
30
fibroblast
29
endothelial cell
29
macrophage
27
CD14-positive monocyte
27
left kidney
26
spinal cord
26
spleen
25
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
22
adipose tissue
22
smooth muscle cell
21
adipocyte
21
hepatocyte
21
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
tibial nerve
18
MCF-7
18
T cell
18
body of pancreas
18
pancreas
17
caudate nucleus
17
foreskin keratinocyte
17
natural killer cell
17
regulatory T cell
17
sigmoid colon
17
trophoblast cell
16
coronary artery
16
ovary
16
pancreatic ductal cell
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
pancreatic beta cell
15
psoas muscle
15
right atrium auricular region
15
transverse colon
14
EndoC_BH1
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
keratinocyte
14
substantia nigra
14
thyroid gland
13
GM12878
13
HepG2
13
foreskin fibroblast
13
mesenchymal stem cell
13
mononuclear cell
13
neutrophil
13
omental fat pad
13
pancreatic acinar cell
13
pancreatic alpha cell
13
putamen
13
tibial artery
12
T-helper 1 cell
12
cardiac muscle cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
heart right ventricle
12
muscle of trunk
12
pancreatic delta cell
12
retinal pigment epithelial cell
12
skeletal muscle tissue
12
testis
11
breast cancer cell
11
chorionic villus
11
layer of hippocampus
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
11
upper lobe of left lung
10
Ammon's horn
10
Peyer's patch
10
T-helper 2 cell
10
ascending aorta
10
cerebellum
10
endocrine pancreas
10
fibroblast of lung
10
frontal cortex
10
left renal cortex interstitium
10
lymphoblastoid cell line
10
right renal pelvis
9
T-helper 17 cell
9
left renal pelvis
9
lymphocyte
9
mammary gland epithelial cell
9
neurosphere
9
osteoblast
9
prostate gland
9
skeletal muscle satellite cell
8
Rhabdomyosarcoma
8
breast epithelium
8
erythroblast
8
esophagus
8
gastric cancer cell
8
left cardiac atrium
8
mammary epithelial cell
8
pituitary stalk
8
skin fibroblast
8
temporal lobe
7
22Rv1
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
aorta
7
bronchial epithelial cell
7
colonic mucosa
7
embryonic stem cell
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
neuroblastoma cell
7
thoracic aorta
7
trophoblast
6
Chondroid Chordoma
6
HAP-1
6
HEK293
6
HT-29
6
IMR-90
6
KARPAS-422 cell
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
mature neutrophil
6
mesendoderm
6
neuronal stem cell
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
6
uterus
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19240
5
GM23248
5
H7-hESC
5
HCT116
5
HL-60
5
HUES8
5
Jurkat
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
MM.1S
5
NAMALWA cell
5
SGBS preadipocytes
5
SK-N-DZ
5
WI38
5
amygdala
5
chorion membrane
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
binding sites
gene expression
files.file_type!
bed bed9
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP