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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
115
monocyte
86
heart
85
stomach
73
kidney
71
brain
67
lung
67
muscle of arm
63
HeLa-S3
63
small intestine
61
adrenal gland
60
A549
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
47
thymus
46
liver
45
right lung
44
H1-hESC
42
B cell
42
right kidney
41
hematopoietic multipotent progenitor cell
40
neural progenitor cell
40
renal cortex interstitium
40
renal pelvis
39
K562
37
retina
36
left kidney
33
heart left ventricle
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
islet of Langerhans
32
spleen
31
CD14-positive monocyte
30
endothelial cell
30
fibroblast
29
macrophage
28
adipose tissue
27
hepatocyte
24
adipocyte
24
smooth muscle cell
23
MCF-7
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
21
foreskin keratinocyte
21
natural killer cell
21
pancreas
20
pigmented layer of retina
20
psoas muscle
20
regulatory T cell
19
HFFc6
19
mononuclear cell
19
ovary
19
tibial nerve
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
muscle of trunk
16
H9
16
caudate nucleus
16
chorionic villus
16
keratinocyte
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
astrocyte
15
coronary artery
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
layer of hippocampus
15
neutrophil
15
pancreatic ductal cell
15
skeletal muscle tissue
15
testis
14
GM12878
14
HepG2
14
T-helper 17 cell
14
T-helper 2 cell
14
cardiac muscle cell
14
endocrine pancreas
14
upper lobe of left lung
13
EndoC_BH1
13
Peyer's patch
13
embryonic stem cell
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic beta cell
13
retinal pigment epithelial cell
13
right atrium auricular region
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
13
tibial artery
12
aorta
12
excitatory neuron
12
left renal cortex interstitium
12
pancreatic acinar cell
11
breast cancer cell
11
breast epithelium
11
fibroblast of dermis
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
osteoblast
11
pancreatic alpha cell
11
pancreatic delta cell
11
prostate gland
11
right renal pelvis
11
substantia nigra
11
temporal lobe
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
left cardiac atrium
10
lymphoblastoid cell line
10
lymphocyte
10
right renal cortex interstitium
10
subcutaneous adipose tissue
10
thoracic aorta
9
22Rv1
9
SK-N-DZ
9
colonic mucosa
9
esophagus
9
omental fat pad
9
parathyroid adenoma
9
putamen
9
skin fibroblast
9
tongue
9
trophoblast
8
Rhabdomyosarcoma
8
ascending aorta
8
cerebellum
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
frontal cortex
8
gastric cancer cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
vagina
7
Ammon's horn
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
LNCaP clone FGC
7
MM.1S
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
angular gyrus
7
chorion membrane
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
glomerular endothelial cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mesendoderm
7
neuroblastoma cell
7
renal cortical epithelial cell
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
H7-hESC
6
HCT116
6
HL-60
6
KARPAS-422 cell
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
binding sites
files.file_type!
tsv
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP