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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
69
heart
64
stomach
61
HeLa-S3
56
A549
56
brain
56
kidney
51
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
CD8-positive, alpha-beta T cell
44
muscle of leg
44
neural progenitor cell
41
large intestine
40
common myeloid progenitor, CD34-positive
40
liver
39
left lung
39
muscle of back
37
B cell
37
K562
37
thymus
35
islet of Langerhans
35
retina
34
endothelial cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
right kidney
31
hepatocyte
30
macrophage
30
renal pelvis
29
renal cortex interstitium
28
fibroblast
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
heart left ventricle
27
left kidney
25
spinal cord
24
regulatory T cell
24
smooth muscle cell
24
spleen
23
T cell
22
adipocyte
22
pericyte cell
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
21
pancreatic ductal cell
20
T-helper 1 cell
20
body of pancreas
20
pigmented layer of retina
19
HFFc6
19
T-helper 17 cell
19
coronary artery
18
caudate nucleus
18
right atrium auricular region
18
trophoblast cell
17
MCF-7
17
mononuclear cell
17
pancreas
17
pancreatic beta cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
heart right ventricle
16
natural killer cell
16
ovary
15
T-helper 2 cell
15
astrocyte
15
frontal cortex
15
mesenchymal stem cell
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
thyroid gland
14
endothelial cell of umbilical vein
14
pancreatic alpha cell
13
ascending aorta
13
excitatory neuron
13
fibroblast of cardiac tissue
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
substantia nigra
13
transverse colon
12
GM12878
12
embryonic stem cell
12
endocrine pancreas
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
muscle of trunk
12
skeletal muscle satellite cell
11
Ammon's horn
11
HepG2
11
aorta
11
cerebellum
11
chorionic villus
11
keratinocyte
11
putamen
11
retinal pigment epithelial cell
11
testis
10
H9
10
Peyer's patch
10
fibroblast of dermis
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
endothelial cell of hepatic sinusoid
9
fibroblast of lung
9
kidney tubule cell
9
layer of hippocampus
9
osteoblast
9
skin fibroblast
9
upper lobe of left lung
8
breast epithelium
8
colon epithelial cell
8
erythroblast
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-SH
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
foreskin fibroblast
7
glomerular endothelial cell
7
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
anterior cingulate cortex
6
cardiac muscle cell
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
Life stage
3
embryonic
Date released
3
September, 2022
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
binding sites
month_released!
February, 2021
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP