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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
scRNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
1
txt
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
39
endothelial cell
36
hepatocyte
23
pancreatic ductal cell
22
epithelial cell of proximal tubule
21
EndoC_BH1
21
foreskin keratinocyte
21
glomerular endothelial cell
20
pigmented layer of retina
18
endothelial cell of umbilical vein
18
pancreatic acinar cell
18
pancreatic beta cell
17
keratinocyte
17
pancreatic alpha cell
16
pancreatic delta cell
14
mammary gland epithelial cell
14
retinal pigment epithelial cell
13
glomerular visceral epithelial cell
11
breast epithelium
11
epithelial cell of prostate
11
esophagus squamous epithelium
10
bronchial epithelial cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
kidney tubule cell
9
colon epithelial cell
8
choroid plexus epithelial cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
renal cortical epithelial cell
7
dermis lymphatic vessel endothelial cell
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
type II pneumocyte
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of esophagus
6
mammary epithelial cell
6
pancreatic polypeptide-secreting cell
6
pulmonary artery endothelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
brain microvascular endothelial cell
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
4
endothelial cell of lymphatic vessel
4
kidney connecting tubule epithelial cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
4
type I pneumocyte
3
S-shaped body
3
aortic endothelial cell
3
club cell
3
dermis microvascular lymphatic vessel endothelial cell
3
endocardial cell
3
epidermal melanocyte
3
epithelial cell of amnion
3
goblet cell
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
3
tracheal epithelial cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney inner medulla collecting duct intercalated cell
2
meso-epithelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
renal principal cell
2
renal vesicle
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
ureteric bud
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
breast - mammary tissue
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
intermediate endothelial cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney epithelium
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
nephron tubule
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
urothelial cell
1
vein endothelial cell
Organ
2
epithelium
2
kidney
Life stage
2
adult
Date released
2
August, 2021
Software used
1
macs
1
r
1
seurat
Lab
2
Katalin Susztak, Upenn
Project
2
AMP
RFA
2
AMP2
annotation_type!
binding sites
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR863XRA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for renal principal cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR766HFA
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Principle cells
Lab:
Katalin Susztak, Upenn
Project:
AMP