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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
3
ChIP-seq
Available data
5
bed bed3+
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
51
muscle of arm
43
muscle of leg
41
muscle of back
16
psoas muscle
14
gastrocnemius medialis
13
muscle of trunk
13
skeletal muscle tissue
11
skeletal muscle satellite cell
9
esophagus muscularis mucosa
9
skeletal muscle fiber
7
stomach smooth muscle
7
type I muscle cell
7
type II muscle cell
6
gastroesophageal sphincter
5
LHCN-M2
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
skeletal muscle cell
4
A673
4
SJCRH30
3
myotube
3
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
forelimb muscle
2
skeletal muscle
1
cardiac muscle myoblast
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
respiratory system smooth muscle
1
smooth muscle tissue
1
somatic muscle myotube
Organ
5
musculature of body
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
binding sites
files.file_type!
bed bed9
Showing 5 of 5 results
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Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101OOW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR310QRT
released
Annotation file set
: Accessible chromatin annotation of skeletal muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP