Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
in vitro differentiated cells
Biosample term
21
foreskin keratinocyte
17
keratinocyte
15
foreskin fibroblast
11
fibroblast of dermis
11
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
7
MM.1S
7
dermis lymphatic vessel endothelial cell
6
GM12864
6
GM12865
6
GM23248
6
skin of body
5
GM10248
5
GM10266
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
5
iPS DF 4.7 Cell Line
4
DND-41
4
KOPT-K1
4
Loucy
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
dermis microvascular lymphatic vessel endothelial cell
3
epidermal melanocyte
3
suprapubic skin
2
GM13976
2
GM13977
2
GM20000
2
basal cell of epidermis
2
granular cell of epidermis
1
BJ
1
GM08714
1
GM12801
1
GM12866
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
Organ
5
skin of body
0
lymph node
Life stage
3
newborn
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
binding sites
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR771DBM
released
Annotation file set
: Candidate regulatory elements for BSS00733 iPS DF 4.7 Cell Line from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480HBB
released
Annotation file set
: Target gene predictions for BSS00733 iPS DF 4.7 Cell Line from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250AAT
released
Annotation file set
: Chromatin states for BSS00733 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867YYD
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell iPS_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR856JYQ
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell iPS cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP