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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
130
monocyte
58
HeLa-S3
52
heart
51
H1-hESC
51
kidney
46
stomach
44
CD8-positive, alpha-beta T cell
43
brain
43
islet of Langerhans
42
neural progenitor cell
39
A549
39
endothelial cell
35
liver
35
lung
34
adrenal gland
34
muscle of arm
34
small intestine
33
hepatocyte
33
placenta
33
retina
32
K562
31
macrophage
31
muscle of leg
30
B cell
30
fibroblast
29
large intestine
27
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
23
CD14-positive monocyte
23
adipose tissue
23
heart left ventricle
23
hematopoietic multipotent progenitor cell
23
pancreatic ductal cell
23
right lung
23
smooth muscle cell
22
EndoC_BH1
22
adipocyte
22
regulatory T cell
22
right kidney
21
pericyte cell
21
renal pelvis
20
epithelial cell of proximal tubule
20
pigmented layer of retina
20
renal cortex interstitium
19
HFFc6
19
T cell
19
glomerular endothelial cell
19
spinal cord
19
subcutaneous adipose tissue
19
tibial nerve
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
pancreatic beta cell
18
spleen
17
T-helper 1 cell
17
caudate nucleus
17
coronary artery
17
natural killer cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
induced pluripotent stem cell
15
T-helper 17 cell
15
astrocyte
15
body of pancreas
15
pancreas
15
pancreatic delta cell
15
right atrium auricular region
15
tibial artery
14
CD8-positive, alpha-beta memory T cell
14
MCF-7
14
embryonic stem cell
14
trophoblast cell
13
excitatory neuron
13
frontal cortex
13
keratinocyte
13
mesenchymal stem cell
13
substantia nigra
12
GM12878
12
HepG2
12
ascending aorta
12
endothelial cell of umbilical vein
12
fibroblast of cardiac tissue
12
heart right ventricle
12
mononuclear cell
12
osteoblast
12
sigmoid colon
11
T-helper 2 cell
11
breast cancer cell
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
putamen
11
retinal pigment epithelial cell
11
skeletal muscle satellite cell
11
thyroid gland
10
Ammon's horn
10
cerebellum
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
lymphoblastoid cell line
10
pancreatic stellate cell
10
skeletal muscle tissue
9
H9
9
aorta
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
foreskin keratinocyte
9
mammary gland epithelial cell
9
progenitor cell of endocrine pancreas
9
skeletal muscle myoblast
9
testis
9
transverse colon
8
Rhabdomyosarcoma
8
erythroblast
8
gastric cancer cell
8
gastrocnemius medialis
8
lymphocyte
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
amygdala
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
colon epithelial cell
7
endocrine pancreas
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of dermis
7
foreskin fibroblast
7
layer of hippocampus
7
memory B cell
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuroblastoma cell
7
skin fibroblast
7
upper lobe of left lung
6
Chondroid Chordoma
6
KARPAS-422 cell
6
Peyer's patch
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
diffuse intrinsic pontine glioma
6
epithelial cell of prostate
6
fibroblast of lung
6
hepatic stellate cell
6
hypothalamus
6
mammary epithelial cell
6
mature neutrophil
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
thoracic aorta
6
type I muscle cell
5
cardiac fibroblast
5
22Rv1
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM18507
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
H7-hESC
5
HAP-1
5
HT-29
5
HUES8
5
IMR-90
5
Intercalated Cell Type A
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
candidate regulatory elements
binding sites
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP