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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
112
monocyte
59
HeLa-S3
50
heart
45
H1-hESC
45
kidney
44
stomach
41
A549
41
CD8-positive, alpha-beta T cell
41
brain
38
neural progenitor cell
34
K562
34
muscle of arm
33
lung
33
placenta
33
small intestine
32
adrenal gland
32
liver
32
retina
31
endothelial cell
31
muscle of leg
30
fibroblast
29
large intestine
28
B cell
28
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
islet of Langerhans
25
muscle of back
23
CD14-positive monocyte
23
hematopoietic multipotent progenitor cell
23
right lung
22
adipocyte
22
macrophage
22
smooth muscle cell
21
adipose tissue
21
heart left ventricle
21
hepatocyte
21
pericyte cell
21
renal pelvis
21
right kidney
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
spinal cord
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
T cell
18
keratinocyte
18
left kidney
17
MCF-7
17
spleen
16
embryonic stem cell
16
tibial nerve
15
coronary artery
15
mesenchymal stem cell
15
pancreas
15
pancreatic ductal cell
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
HepG2
14
caudate nucleus
14
natural killer cell
14
retinal pigment epithelial cell
14
trophoblast cell
13
astrocyte
13
body of pancreas
13
fibroblast of cardiac tissue
13
regulatory T cell
13
tibial artery
12
EndoC_BH1
12
endothelial cell of umbilical vein
12
excitatory neuron
12
mononuclear cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
right atrium auricular region
12
sigmoid colon
11
ascending aorta
11
cardiac muscle cell
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
foreskin fibroblast
11
foreskin keratinocyte
11
heart right ventricle
11
mammary gland epithelial cell
11
pancreatic acinar cell
11
psoas muscle
11
subcutaneous adipose tissue
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
pancreatic alpha cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
10
substantia nigra
10
thyroid gland
9
Ammon's horn
9
H9
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
liposarcoma
9
neutrophil
9
ovary
9
pancreatic delta cell
9
skeletal muscle tissue
9
testis
8
B-lymphoblastoid cell line
8
aorta
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
left cardiac atrium
8
lymphocyte
8
mammary epithelial cell
8
omental fat pad
8
pituitary stalk
8
prostate gland
8
putamen
8
skeletal muscle fiber
8
skin fibroblast
8
transverse colon
7
CD4-positive, alpha-beta T cell
7
GM19240
7
IMR-90
7
Jurkat
7
T-helper 2 cell
7
bronchial epithelial cell
7
cerebellum
7
colon epithelial cell
7
endocrine pancreas
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
layer of hippocampus
7
mature neutrophil
7
mesendoderm
7
muscle of trunk
7
neuronal stem cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19238
6
GM19239
6
HAP-1
6
HEK293
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LoVo cell
6
Peyer's patch
6
T-helper 1 cell
6
WERI-Rb-1
6
chondrocyte
6
choroid plexus epithelial cell
6
endodermal cell
6
hESC cell
6
neuroblastoma cell line
6
temporal lobe
6
thoracic aorta
6
trophoblast
6
type I muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM12891
5
GM12892
5
GM18507
5
GM23248
5
H7-hESC
5
HCT-116 cell
5
HuH-7
5
LHCN-M2
5
MG63
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
T-helper 17 cell
5
acute myeloid leukemia
5
chorion membrane
5
chorionic villus
5
cingulate gyrus
5
enterocyte
5
glomerular visceral epithelial cell
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
candidate regulatory elements
Showing 7 of 7 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP