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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
37
HiC
8
RNA-seq
6
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
89
monocyte
42
heart
39
A549
39
stomach
38
brain
33
kidney
32
lung
32
muscle of arm
31
CD8-positive, alpha-beta T cell
31
placenta
30
small intestine
28
adrenal gland
28
muscle of leg
28
neural progenitor cell
27
large intestine
26
left lung
25
common myeloid progenitor, CD34-positive
25
muscle of back
24
thymus
22
hematopoietic multipotent progenitor cell
22
right lung
20
breast cancer cell
20
right kidney
19
liver
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
16
K562
16
spinal cord
15
MCF-7
14
CD8-positive, alpha-beta memory T cell
13
adipose tissue
13
heart left ventricle
12
mononuclear cell
12
neuroblastoma cell
12
spleen
11
HepG2
11
keratinocyte
10
adipocyte
10
foreskin keratinocyte
10
gastric cancer cell
10
trophoblast cell
9
Rhabdomyosarcoma
9
T cell
9
diffuse intrinsic pontine glioma
9
fibroblast of lung
9
foreskin fibroblast
9
liposarcoma
8
CD14-positive monocyte
8
caudate nucleus
8
endothelial cell of umbilical vein
8
fibroblast of cardiac tissue
8
mammary gland epithelial cell
8
retina
8
sigmoid colon
8
testis
7
B-lymphoblastoid cell line
7
HeLa-S3
7
T-cell acute lymphoblastic leukemia
7
bronchial epithelial cell
7
cardiac muscle cell
7
embryonic stem cell
7
endocrine pancreas
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of dermis
7
gastrocnemius medialis
7
hepatocyte
7
layer of hippocampus
7
mature neutrophil
7
prostate gland
7
skeletal muscle tissue
7
thyroid gland
6
22Rv1
6
Chondroid Chordoma
6
GM12878
6
H1-hESC
6
NAMALWA cell
6
Peyer's patch
6
T-helper 17 cell
6
acute myeloid leukemia
6
aorta
6
body of pancreas
6
endodermal cell
6
hESC cell
6
mesenchymal stem cell
6
muscle of trunk
6
natural killer cell
6
neuroblastoma cell line
6
pancreas
6
temporal lobe
6
tibial nerve
6
upper lobe of left lung
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM12875
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM19240
5
HEK293
5
HL-60
5
IMR-90
5
KARPAS-422 cell
5
NT2-D1 cell
5
SK-N-DZ
5
SK-N-MC
5
SK-N-SH
5
T-helper 1 cell
5
T-helper 2 cell
5
WERI-Rb-1
5
angular gyrus
5
chorionic villus
5
choroid plexus epithelial cell
5
cingulate gyrus
5
coronary artery
5
epithelial cell of prostate
5
heart right ventricle
5
left cardiac atrium
5
mammary epithelial cell
5
naive T cell
5
osteoblast
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
psoas muscle
5
regulatory T cell
5
skeletal muscle myoblast
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
GM08714
4
GM23248
4
HAP-1
4
HK-2 cell
4
HS-SY-2 cell
4
HT-29
4
HuH-7
4
Jurkat
4
LHCN-M2
4
LNCaP clone FGC
4
LoVo cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
OCI-LY1
4
OCI-LY7
4
PC-3
4
PC-9
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
Rh-4 cell
4
SW480
4
T47D
4
Th1 cell
4
VCaP cell
4
ascending aorta
4
colonic mucosa
4
diffuse large B-cell lymphoma
4
endothelial cell of hepatic sinusoid
4
esophageal squamous cell carcinoma
4
fibroblast of mammary gland
4
fibroblast of villous mesenchyme
4
iPS DF 4.7 Cell Line
4
immortal human breast epithelial cell line cell
4
kidney tubule cell
4
left renal pelvis
4
neuronal stem cell
4
neutrophil
4
skin fibroblast
4
squamous cell lung carcinoma
4
substantia nigra
4
synovial sarcoma cell
4
thoracic aorta
4
tracheal epithelial cell
4
transverse colon
4
triple-negative breast cancer
3
B-lymphocyte
3
CD4-positive, alpha-beta T cell
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
Daoy
3
GM10248
3
GM10266
Organ
6
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
October, 2022
Software used
3
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_type!
candidate regulatory elements
Showing 6 of 6 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP