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Citing CMDGA
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Annotation type
candidate regulatory elements
5
chromatin state
4
target gene predictions
2
accessible chromatin
2
binding sites
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
4
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
5
endothelial cell of umbilical vein
4
aorta
3
ascending aorta
3
coronary artery
3
thoracic aorta
3
tibial artery
2
dermis blood vessel endothelial cell
1
brain microvascular endothelial cell
1
fibroblast of pulmonary artery
fibroblast of the aortic adventitia
1
kidney capillary endothelial cell
1
pulmonary artery endothelial cell
Organ
5
blood vessel
5
epithelium
5
vasculature
5
vein
Life stage
2
newborn
Date released
2
January, 2020
2
September, 2022
1
August, 2017
Software used
5
chromhmm
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
annotation_type!
candidate regulatory elements
biosample_term_name!
fibroblast of the aortic adventitia
Showing 5 of 5 results
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Download
FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP