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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
113
monocyte
64
heart
64
stomach
61
HeLa-S3
55
kidney
53
brain
52
lung
51
H1-hESC
50
muscle of arm
47
adrenal gland
47
small intestine
45
CD8-positive, alpha-beta T cell
45
placenta
43
A549
42
large intestine
41
common myeloid progenitor, CD34-positive
41
muscle of back
41
muscle of leg
39
left lung
37
neural progenitor cell
36
liver
36
thymus
35
islet of Langerhans
33
K562
33
right lung
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
29
renal pelvis
28
B cell
27
CD14-positive monocyte
27
hepatocyte
27
left kidney
26
spinal cord
25
endothelial cell
25
spleen
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
22
heart left ventricle
21
epithelial cell of proximal tubule
20
MCF-7
20
body of pancreas
20
breast cancer cell
20
regulatory T cell
19
macrophage
18
HFFc6
18
glomerular endothelial cell
18
tibial nerve
17
foreskin keratinocyte
17
pancreatic ductal cell
17
subcutaneous adipose tissue
16
T-helper 1 cell
16
T-helper 17 cell
16
foreskin fibroblast
16
induced pluripotent stem cell
16
ovary
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
EndoC_BH1
15
H9
15
caudate nucleus
15
fibroblast
15
keratinocyte
15
natural killer cell
15
substantia nigra
14
coronary artery
14
mononuclear cell
14
omental fat pad
14
psoas muscle
14
retina
14
right atrium auricular region
14
smooth muscle cell
14
transverse colon
13
GM12878
13
adipocyte
13
cardiac muscle cell
13
heart right ventricle
13
neutrophil
13
skeletal muscle tissue
13
testis
13
thyroid gland
12
cerebellum
12
gastrocnemius medialis
12
layer of hippocampus
12
mesenchymal stem cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreas
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
HepG2
11
T cell
11
ascending aorta
11
chorionic villus
11
endothelial cell of umbilical vein
11
fibroblast of lung
11
frontal cortex
11
lymphoblastoid cell line
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
prostate gland
11
putamen
11
tibial artery
10
T-helper 2 cell
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mammary epithelial cell
10
mammary gland epithelial cell
10
osteoblast
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle myoblast
9
Ammon's horn
9
Peyer's patch
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neuronal stem cell
9
neurosphere
9
pancreatic beta cell
9
pancreatic delta cell
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
endothelial cell of hepatic sinusoid
8
epithelial cell of prostate
8
esophagus
8
fibroblast cell line
8
left renal cortex interstitium
8
pericyte cell
8
pituitary stalk
8
right renal pelvis
7
HEK293
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
left renal pelvis
7
lower leg skin
7
pancreatic alpha cell
7
temporal lobe
7
trophoblast
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
HAP-1
6
IMR-90
6
SK-N-MC
6
anterior cingulate cortex
6
astrocyte
6
cardiac precursors (cardiac muscle cell)
6
endometrium adenocarcinoma
6
esophagus squamous epithelium
6
eye
6
glomerular visceral epithelial cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
parathyroid adenoma
6
right renal cortex interstitium
6
thoracic aorta
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
chromatin state
accessible chromatin
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP