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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
56
HeLa-S3
51
H1-hESC
43
CD8-positive, alpha-beta T cell
42
islet of Langerhans
42
neural progenitor cell
41
endothelial cell
36
kidney
32
fibroblast
32
heart
32
hepatocyte
32
macrophage
31
retina
27
K562
27
liver
27
stomach
26
brain
25
pancreatic ductal cell
23
A549
23
EndoC_BH1
22
B cell
22
smooth muscle cell
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
lung
19
placenta
19
regulatory T cell
18
adipose tissue
18
glomerular endothelial cell
18
muscle of arm
18
pancreatic beta cell
18
small intestine
18
subcutaneous adipose tissue
17
adipocyte
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thymus
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
large intestine
15
T cell
15
heart left ventricle
15
muscle of leg
15
pancreatic delta cell
14
astrocyte
14
coronary artery
14
keratinocyte
14
natural killer cell
14
osteoblast
14
tibial nerve
13
HepG2
13
T-helper 1 cell
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
retinal pigment epithelial cell
13
right atrium auricular region
13
spinal cord
12
GM12878
12
MCF-7
12
T-helper 17 cell
12
caudate nucleus
12
common myeloid progenitor, CD34-positive
12
embryonic stem cell
12
left lung
12
lymphoblastoid cell line
12
muscle of back
12
neuroblastoma cell
12
pancreas
12
renal pelvis
12
right kidney
12
spleen
12
tibial artery
11
body of pancreas
11
frontal cortex
11
mesenchymal stem cell
10
Rhabdomyosarcoma
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
renal cortex interstitium
10
right lung
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
ascending aorta
9
cardiac muscle cell
9
cardiomyocytes
9
cerebellum
9
diffuse intrinsic pontine glioma
9
erythroblast
9
glomerular visceral epithelial cell
9
liposarcoma
9
mammary gland epithelial cell
9
omental fat pad
9
ovary
9
substantia nigra
8
B-lymphoblastoid cell line
8
H9
8
endothelial cell of umbilical vein
8
fibroblast cell line
8
foreskin fibroblast
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
skeletal muscle satellite cell
7
CD4-positive helper T cell
7
CD8-positive, alpha-beta memory T cell
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
heart right ventricle
7
left kidney
7
lymphocyte
7
mammary epithelial cell
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
neutrophil
7
psoas muscle
7
sigmoid colon
7
skeletal muscle myoblast
6
Chondroid Chordoma
6
GM19240
6
HUES8
6
IMR-90
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
layer of hippocampus
6
mesendoderm
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
skeletal muscle tissue
6
skin fibroblast
6
smooth muscle cell of the coronary artery
6
testis
6
trophoblast cell
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
HAP-1
Life stage
1
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
chromatin state
candidate regulatory elements
Showing 6 of 6 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP