Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
caQTL
chromatin state
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
53
HeLa-S3
41
H1-hESC
20
heart
19
HFFc6
19
K562
17
brain
16
CD14-positive monocyte
16
lung
16
muscle of arm
16
placenta
16
stomach
15
small intestine
15
thymus
14
large intestine
14
muscle of leg
13
kidney
13
left lung
13
muscle of back
11
adrenal gland
11
right lung
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
GM12878
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
8
H9
7
fibroblast cell line
7
foreskin fibroblast
7
lymphocyte
7
melanoma
7
smooth muscle cell
7
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
HepG2
6
adipocyte
6
dendritic cell
6
endothelial cell of umbilical vein
6
fibroblast
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
cardiac muscle cell
5
fibroblast of lung
5
foreskin keratinocyte
5
hepatocyte
5
iPSC derived cell line
5
liver
5
macrophage
5
mammary epithelial cell
5
muscle of trunk
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
5
spleen
4
B cell
4
CyT49
4
IMR-90
4
Jurkat
4
MCF-7
4
SK-N-SH
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
embryonic stem cell
4
epithelial cell of prostate
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
glioblastoma multiforme cancer stem cell
4
heart left ventricle
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
mesendoderm
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
psoas muscle
4
retina
4
skeletal muscle myoblast
4
skin fibroblast
4
trophoblast
3
22Rv1
3
A549
3
AG04449 cell
3
AG04450 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HCT-116 cell
3
HEK293
3
MCF 10A cell
3
NAMALWA cell
3
NT2-D1 cell
3
PC-9
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 17 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
adipose tissue
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart right ventricle
3
liposarcoma
3
myotube
3
neurosphere
3
neutrophil
3
ovary
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
sigmoid colon
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type B pancreatic cell
2
A673
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphoblastoid cell line
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
CMK
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM15510
2
GM18507
2
GM18526
2
GM18951
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT116
2
HEK293-T-REx cell
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
NCI-H460 cell
2
NHEK
Organ
4
connective tissue
Life stage
adult
1
embryonic
Date released
1
February, 2021
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
macs
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
annotation_type!
chromatin state
relevant_life_stage!
adult
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP