Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
chromatin state
4
target gene predictions
3
candidate regulatory elements
1
accessible chromatin
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
2
HiC
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
30
kidney
30
retina
28
heart
28
islet of Langerhans
28
stomach
24
liver
22
brain
20
pigmented layer of retina
19
adrenal gland
19
lung
19
muscle of arm
18
placenta
18
small intestine
17
large intestine
17
muscle of leg
15
heart left ventricle
15
muscle of back
15
pancreas
15
spleen
15
subcutaneous adipose tissue
15
thymus
13
coronary artery
13
left lung
13
renal cortex interstitium
13
renal pelvis
13
tibial nerve
12
right kidney
12
right lung
11
adipose tissue
11
caudate nucleus
11
putamen
11
right atrium auricular region
11
tibial artery
10
body of pancreas
10
omental fat pad
10
spinal cord
10
substantia nigra
9
left kidney
8
Ammon's horn
8
ascending aorta
8
cerebellum
8
frontal cortex
8
ovary
8
prostate gland
8
psoas muscle
8
sigmoid colon
8
testis
7
heart right ventricle
7
thyroid gland
7
transverse colon
7
upper lobe of left lung
6
amygdala
6
gastrocnemius medialis
6
hypothalamus
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
nucleus accumbens
6
right renal pelvis
6
skeletal muscle tissue
5
Peyer's patch
5
anterior cingulate cortex
5
breast epithelium
5
cartilage tissue
5
cerebellum (Hemisphere)
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
globus pallidus
5
midbrain
5
muscle of trunk
5
right lobe of liver
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
trophoblast
5
uterus
4
C1 segment of cervical spinal cord
4
aorta
4
chorionic villus
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
esophagus
4
gastrocnemius medialis(Muscle - Skeletal)
4
gastroesophageal sphincter
4
left ventricle myocardium
4
lower leg skin
4
occipital lobe
4
superior temporal gyrus
4
temporal lobe
4
thoracic aorta
3
colonic mucosa
3
endocrine pancreas
3
eye
3
left cardiac atrium
3
medulla oblongata
3
middle frontal gyrus
3
parathyroid adenoma
3
pons
3
prefrontal cortex
3
skin of body
3
suprapubic skin
3
tongue
3
umbilical cord
3
vagina
2
hindlimb muscle
2
muscle of leg
2
angular gyrus
2
blood
2
breast carcinoma
2
cerebellar cortex
2
chorion
2
cingulate gyrus
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endometrium cancer
2
first pancreatic bud
2
forelimb muscle
2
kidney epithelium
2
limb
2
mammary gland
2
middle frontal area 46
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
right cardiac atrium
2
skin of forearm
2
skin of prepuce of penis
2
stomach smooth muscle
2
tissue
2
urinary bladder
2
visceral abdominal adipose tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
amnion
1
anterior parahippocampal gyrus
1
aorta wall
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
breast
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
chorion membrane
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic facial prominence
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
fallopian tube
1
femur
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
germinal matrix
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
inferior parietal cortex
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
minor salivary gland
1
morula
1
mucosa of stomach
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
Organ
8
musculature of body
Life stage
3
adult
1
child
1
young adult
Date released
3
February, 2021
3
March, 2020
1
June, 2020
1
May, 2021
Software used
r
3
encode-ccres
2
hiccups
1
abc
1
macs
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
chromatin state
software_used.software.name!
r
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR458FIQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE psoas muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR386ZEU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE psoas muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR825LZP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE psoas muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593OAU
released
Annotation file set
: enhancer-gene predicton of psoas_muscle-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR404JHM
released
Annotation file set
: Accessible chromatin annotation for Muscle Muscles from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR735RYC
released
Annotation file set
: A target gene prediction annotation in psoas muscle of DSR656CHU Hi-C for child
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694YUN
released
Annotation file set
: A target gene prediction annotation in psoas muscle of DSR492BLD Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR697CGG
released
Annotation file set
: A target gene prediction annotation in Human Psoas of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP