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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
chromatin state
2
target gene predictions
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
41
stomach
40
heart
36
kidney
34
lung
33
muscle of arm
30
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
16
spleen
14
liver
14
spinal cord
12
heart left ventricle
11
islet of Langerhans
10
adipose tissue
10
body of pancreas
10
sigmoid colon
9
ovary
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
testis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
Peyer's patch
7
endocrine pancreas
7
heart right ventricle
7
omental fat pad
7
psoas muscle
7
retina
7
skeletal muscle tissue
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
caudate nucleus
6
esophagus squamous epithelium
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
right renal pelvis
6
substantia nigra
6
temporal lobe
5
aorta
5
ascending aorta
5
breast epithelium
5
cerebellum
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
pancreas
5
parathyroid adenoma
5
right atrium auricular region
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
vagina
4
angular gyrus
4
bone tissue
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
esophagus
4
eye
4
frontal cortex
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
prostate gland
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
uterus
3
Ammon's horn
3
chorion membrane
3
left cardiac atrium
3
limb
3
putamen
3
right cardiac atrium
3
right lobe of liver
3
suprapubic skin
3
urinary bladder
2
Brodmann (1909) area 46
2
amnion
2
cerebellar cortex
2
chorion
2
femur
2
germinal matrix
2
globus pallidus
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of stomach
2
occipital lobe
2
placental basal plate
2
umbilical cord
2
visceral abdominal adipose tissue
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
aortic valve
1
arm bone
1
bladder
1
breast - mammary tissue
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
diencephalon
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
forelimb muscle
1
gastrocnemius medialis(Muscle - Skeletal)
1
germinal center
1
hindlimb muscle
1
hypothalamus
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
left ventricle myocardium
1
leg bone
1
medulla oblongata
1
metanephros
1
midbrain
1
minor salivary gland
1
mitral valve
1
nucleus accumbens
1
parietal lobe
1
pituitary
1
pons
1
prostate
1
pulmonary valve
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
right arm bone
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of body
1
small intestine - terminal Ileum
1
superior temporal gyrus
1
thyroid
1
tricuspid valve
1
whole blood
Organ
5
vagina
Life stage
5
adult
Date released
2
February, 2021
2
September, 2022
1
March, 2024
Software used
3
r
2
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
chromatin state
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR851YIE
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Vagina.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR235RCM
released
Annotation file set
: Candidate regulatory elements for BSS01887 vagina from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR005VHE
released
Annotation file set
: Candidate regulatory elements for BSS01886 vagina from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR460MOH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE vagina
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860UKY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE vagina
Lab:
AMP-T2D consortium
Project:
AMP