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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
55
brain
18
caudate nucleus
15
substantia nigra
14
cerebellum
14
frontal cortex
14
putamen
12
layer of hippocampus
11
Ammon's horn
10
pituitary stalk
9
choroid plexus epithelial cell
9
temporal lobe
8
SK-N-DZ
8
SK-N-SH
7
SK-N-MC
7
amygdala
7
globus pallidus
7
hypothalamus
7
midbrain
7
nucleus accumbens
6
BE(2)-C
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
cingulate gyrus
5
cardiac fibroblast
5
Daoy
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
medulla oblongata
5
middle frontal gyrus
5
pons
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
H54
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
2
brain
Life stage
1
unknown
Date released
1
February, 2024
1
January, 2022
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
chromatin state
Showing 2 of 2 results
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Download
FileSet
DSR721DBF
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-derived hippocampal DG-like neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317RKZ
released
Annotation file set
: Gene expression annotation of RNA-seq_iPSC-derived hippocampal DG-like neurons
Lab:
AMP-T2D consortium
Project:
AMP