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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
chromatin state
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
HiC
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
48
small intestine
43
large intestine
18
sigmoid colon
15
transverse colon
11
Peyer's patch
8
colon epithelial cell
7
HT-29
7
colonic mucosa
6
SW480
6
duodenal mucosa
6
enterocyte
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
5
HCT116
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
rectum smooth muscle tissue
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
2
colorectal adenocarcinoma
Organ
5
intestine
5
large intestine
Life stage
3
adult
Date released
2
February, 2024
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
chromatin state
organ_slims!
brain
Showing 5 of 5 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR756UQP
released
Annotation file set
: Candidate regulatory elements for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP