Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
97
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
20
fibroblast
19
HFFc6
19
brain
19
endothelial cell
19
pericyte cell
19
stomach
18
A549
18
hepatocyte
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
lung
16
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
macrophage
11
B cell
11
astrocyte
11
heart left ventricle
11
right kidney
11
right lung
11
thymus
10
coronary artery
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
left kidney
9
liver
9
tibial nerve
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
ascending aorta
7
body of pancreas
7
caudate nucleus
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
omental fat pad
7
right atrium auricular region
7
spinal cord
7
spleen
6
HepG2
6
adipose tissue
6
cerebellum
6
fibroblast of cardiac tissue
6
frontal cortex
6
heart right ventricle
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
Ammon's horn
5
MCF-7
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
pancreas
5
putamen
5
sigmoid colon
5
subcutaneous adipose tissue
5
substantia nigra
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
iPSC derived cell line
4
muscle of trunk
4
osteoblast
4
ovary
4
pancreatic beta cell
4
psoas muscle
4
retina
4
right lobe of liver
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
cardiac fibroblast
3
C1 segment of cervical spinal cord
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
amygdala
3
anterior cingulate cortex
3
cardiac muscle cell
3
cerebellum (Hemisphere)
3
chorion membrane
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
gastrocnemius medialis(Muscle - Skeletal)
3
hepatic stellate cell
3
hypothalamus
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
left ventricle myocardium
3
mesenchymal stem cell
3
mesothelial cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
nucleus accumbens
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
testis
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
Date released
2
November, 2019
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
eQTL
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR163OWK
released
Annotation file set
: Induced Pluripotent Stem Cell derived from fibroblasts accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR003GNM
released
Annotation file set
: Induced Pluripotent Stem Cell derived from beta-cells accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP